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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(TLR8_HUMAN) | C 1 (C) | polymer(polypeptide(L)) [746 aa] | Toll-like receptor 8 :TLR8_HUMAN | |
2 | b | L 1 (L) | branched(oligosaccharide) | beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | 475I 476K 479C 489S 490L 511N 534Y 536D (identity: 100.0 %/94.9 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:4r09_C_1 identity=94.9% |
queryA 32:RSYPCDEKKQNDSVIAECSNRRLQEVPQTVGKYVTELDLSDNFITHITNESFQGLQNLTKINLNHNPNVQHQNGNPGIQSNGLNITDGAFLNLKNLRELL: 131 :********** ******************************************************** *******************: 4r09_C_1 10:RSYPCDEKKQXXXVIAECSNRRLQEVPQTVGKYVTELDLSDNFITHITNESFQGLQNLTKINLNHNPNVXXXXXXXXXXXXGLNITDGAFLNLKNLRELL: 109 SecStr : SSEE --- EEE SS SS SSS SS SEEE SS EE TTSSTT S EEE S S ------------ EE TTTTTT SS EEE: ExpBur :ebebbeeeee---eebebbebebeebbeebeeebeebebbebebeebeeebbeebeebeebbbbebeee------------ebebeebbbeebeebeebb: queryA 132:LEDNQLPQIPSGLPESLTELSLIQNNIYNITKEGISRLINLKNLYLAWNCYFNKVCEKTNIEDGVFETLTNLELLSLSFNSLSHVPPKLPSSLRKLFLSN: 231 :****************************************************************************************************: 4r09_C_1 110:LEDNQLPQIPSGLPESLTELSLIQNNIYNITKEGISRLINLKNLYLAWNCYFNKVCEKTNIEDGVFETLTNLELLSLSFNSLSHVPPKLPSSLRKLFLSN: 209 SecStr : SS SS SS TT SEEE SS EE TTTTTT TT SEEE SSS TT EE TTTTTT TT EEE SS SS S TT SEEE TT: ExpBur :bbebebeebbebbbebbebbbbbbbebeebbeebbbebeebebbebbbbbbeeeeeeebebeebbbeebeebebbbbbbbbbeebbeebbebbeebebbb: queryA 232:TQIKYISEEDFKGLINLTLLDLSGNCPRCFNAPFPCVPCDGGASINIDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNMPHLKVLDLEFNYLVGEIASGA: 331 :****************************************************************************************************: 4r09_C_1 210:TQIKYISEEDFKGLINLTLLDLSGNCPRCFNAPFPCVPCDGGASINIDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNMPHLKVLDLEFNYLVGEIASGA: 309 SecStr :S EE GGGSSS S EEE TTSS TT SS GGG EE TTTTTT TT EEE TTS S GGGGTT TT EEE SS HHHHHH G: ExpBur :bebeebbeebbeebeebbbbbbbbbbbbbeeeebeeeebeeeeebebeeebbeebeebeebbbbbbbbeebeeebbeebeebeebbbbebebbebbeebe: queryA 332:FLTMLPRLEILDLSFNYIKGSYPQHINISRNFSKLLSLRALHLRGYVFQELREDDFQPLMQLPNLSTINLGINFIKQIDFKLFQNFSNLEIIYLSENRIS: 431 :****************************************************************************************************: 4r09_C_1 310:FLTMLPRLEILDLSFNYIKGSYPQHINISRNFSKLLSLRALHLRGYVFQELREDDFQPLMQLPNLSTINLGINFIKQIDFKLFQNFSNLEIIYLSENRIS: 409 SecStr :GGGG TT EEE S TT SS GGGGG TT EEE TT SEE GGGGGGGTT TT EEE SS EE GGGGTS SS EEE SS : ExpBur :bbeebeebeebbbbbbbeeeeeeeebebbeebeebeebebbbbbbbbbeebeeebbebbbebeebbbbbbbebebeebebebbeebeebebbbbbebebe: queryA 432:PLVKDTRQSYANSSSFQRHIRKRRSTDFEFDPHSNFYHFTRPLIKPQCAAYGKALDLSLNSIFFIGPNQFENLPDIACLNLSANSNAQVLSGTEFSAIPH: 531 :* **************************************************************************: 4r09_C_1 410:PXXXXXXXXXXXXXXXXXXXXXXXXXDFEFDPHSNFYHFTRPLIKPQCAAYGKALDLSLNSIFFIGPNQFENLPDIACLNLSANSNAQVLSGTEFSAIPH: 509 SecStr : ------------------------- SS TTS SSS S SS HHHHTTS EEE SS S TTTTTT SEEE SS S TTTTSTT: ExpBur :e-------------------------eeebeeeeeebeeeeebbeeebeeeeebbbbbebebeebbeebbeebbebbbbbbbebebebebebebbeebee: Contact : bb b bb b queryA 532:VKYLDLTNNRLDFDNASALTELSDLEVLDLSYNSHYFRIAGVTHHLEFIQNFTNLKVLNLSHNNIYTLTDKYNLESKSLVELVFSGNRLDILWNDDDNRY: 631 :****************************************************************************************************: 4r09_C_1 510:VKYLDLTNNRLDFDNASALTELSDLEVLDLSYNSHYFRIAGVTHHLEFIQNFTNLKVLNLSHNNIYTLTDKYNLESKSLVELVFSGNRLDILWNDDDNRY: 609 SecStr : EEE S TTTTTT TT EEE S HHHHT TTS GGGGG TT EEE TT SS S BSS EEE SS HHHHT TT TT: ExpBur :bebbbbbebebbbeeeebbebbeebbbbbbbebbeebeeeeeebbbbbbeebeebeebbbbebebeebeeeeebebebbeebbbbbbbbeebbeeeeeeb: Contact : b b queryA 632:ISIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTELHINDNMLKFFNWTLLQQFPRLELLDLRGNKLLFLTDSLSDFTSSLRTLLLSHNRISHLPSGF: 731 :****************************************************************************************************: 4r09_C_1 610:ISIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTELHINDNMLKFFNWTLLQQFPRLELLDLRGNKLLFLTDSLSDFTSSLRTLLLSHNRISHLPSGF: 709 SecStr :TTTTTTB S EEE SS S HHHHHTS TT SEEE SS GGGGGG SS EEE SS S GGGT S EEE SS SSB: ExpBur :bebbebbeebeebbbbebebeebbeebbebbbeebeebbbbebebeebebebbeebeebebbbbebbebeebbeebeebbeebebbbbbebebeebbeeb: queryA 732:LSEVSSLKHLDLSSNLLKTINKSALETKTTTKLSMLELHGNPFECTCDIGDFRRWMDEHLNVKIPRLVDVICASPGDQRGKSIVSL: 817 :**************************************************************************************: 4r09_C_1 710:LSEVSSLKHLDLSSNLLKTINKSALETKTTTKLSMLELHGNPFECTCDIGDFRRWMDEHLNVKIPRLVDVICASPGDQRGKSIVSL: 795 SecStr :SSS SS EEE SS STB TT SS SEEE S EE STTTHHHHHHHHT SSSB TT EEESTTTTTS SS : ExpBur :eeebeebeebbbbebebebbeebbeeeeeeeebeebebbebebebeeebbebeebbeebeebebeebbebebeeeeeeeeebbeee: |