[pdbjlvh2]Protein Model on 4r08_C_1_KA

Protein Model on 4r08_C_1_KA_1 (TEMPLATE: 4r08 )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:2]

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MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(TLR8_HUMAN)	C 1 (C)	polymer(polypeptide(L)) [731 aa]	Toll-like receptor 8 :TLR8_HUMAN
2	b		KA 1 (D)	non-polymer(URI)	URIDINE	520V 543D 545D 573V 574T (identity: 100.0 %/93.2 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:4r08_C_1 identity=93.2%

queryA        32:RSYPCDEKKQNDSVIAECSNRRLQEVPQTVGKYVTELDLSDNFITHITNESFQGLQNLTKINLNHNPNVQHQNGNPGIQSNGLNITDGAFLNLKNLRELL: 131
                :********     ********************************************************            *******************:
4r08_C_1      10:RSYPCDEKXXXXXVIAECSNRRLQEVPQTVGKYVTELDLSDNFITHITNESFQGLQNLTKINLNHNPNVXXXXXXXXXXXXGLNITDGAFLNLKNLRELL: 109
SecStr          :  SSSEE ----- EEE  SS  SS  S   TT SEEE TTS   B  TTTTTT  S  EEE  S S  ------------  B  SSSSTT SS  EEE:    
ExpBur          :eeebbbbe-----eebebeebebeebbeebeeebeebebbebebeebeeebbeebeebeebbbbebeee------------ebebeebbbeebeebeebb:    

queryA       132:LEDNQLPQIPSGLPESLTELSLIQNNIYNITKEGISRLINLKNLYLAWNCYFNKVCEKTNIEDGVFETLTNLELLSLSFNSLSHVPPKLPSSLRKLFLSN: 231
                :****************************************************************************************************:
4r08_C_1     110:LEDNQLPQIPSGLPESLTELSLIQNNIYNITKEGISRLINLKNLYLAWNCYFNKVCEKTNIEDGVFETLTNLELLSLSFNSLSHVPPKLPSSLRKLFLSN: 209
SecStr          :  SS  SS  SS  TT SEEE  SS   EE STTTTT TT  EEE  SSS TT S    EE TTTTTS  S  EEE  SS  SS  S   TT  EEE  S:    
ExpBur          :bbebebeebbeebbebbbbbbbbbbebbebbeebbbebeebeebebbbbbbeeeebeebeeeebbbeebeebebbbbbbbbbeebbeebbebbeebebbb:    

queryA       232:TQIKYISEEDFKGLINLTLLDLSGNCPRCFNAPFPCVPCDGGASINIDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNMPHLKVLDLEFNYLVGEIASGA: 331
                :****************************************************************************************************:
4r08_C_1     210:TQIKYISEEDFKGLINLTLLDLSGNCPRCFNAPFPCVPCDGGASINIDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNMPHLKVLDLEFNYLVGEIASGA: 309
SecStr          :S   EE TTTTTT SS  EEE  SSS   TT SS     GGG   EE TTTTSS TT  EEE  SS   S  GGGSTT TT  EEE  SS THHHHHS G:    
ExpBur          :bebeebbeebbeebeebebbbbbbbbbbbeeeebeeeebeeeeebebeeebbeebeebeebbbbbbbbeebeeebbeebeebebbbbbebebbebbeebe:    

queryA       332:FLTMLPRLEILDLSFNYIKGSYPQHINISRNFSKLLSLRALHLRGYVFQELREDDFQPLMQLPNLSTINLGINFIKQIDFKLFQNFSNLEIIYLSENRIS: 431
                :****************************************************************************************************:
4r08_C_1     310:FLTMLPRLEILDLSFNYIKGSYPQHINISRNFSKLLSLRALHLRGYVFQELREDDFQPLMQLPNLSTINLGINFIKQIDFKLFQNFSNLEIIYLSENRIS: 409
SecStr          :GGGG TT  EEE  S   TT   SS    GGGGG TT  EEE  S   SEE TGGGGGGTT TT  EEE  SS   EE GGGGGS SS  EEE  SS   :    
ExpBur          :bbeebeebeebbbbebbeeeeeeeebebbeebeebebbebbebbbbbbeebeeebbebbbebeebebbbbbebebeebebebbeebeebebbbbbebebe:    

queryA       432:PLVKDTRQSYANSSSFQRHIRKRRSTDFEFDPHSNFYHFTRPLIKPQCAAYGKALDLSLNSIFFIGPNQFENLPDIACLNLSANSNAQVLSGTEFSAIPH: 531
                :*                         **************************************************************************:
4r08_C_1     410:PXXXXXXXXXXXXXXXXXXXXXXXXXDFEFDPHSNFYHFTRPLIKPQCAAYGKALDLSLNSIFFIGPNQFENLPDIACLNLSANSNAQVLSGTEFSAIPH: 509
SecStr          : -------------------------  SS TTS SSS  S SS HHHHTTS EEE  SS  SS  TTTTTT    SEEE TTS       S TTTTSTT:    
ExpBur          :e-------------------------eeeeebeeebbeeeeebbeeebeeeeebbbbbebebeebbeebbeebbebbbbbbbebebebebebebbeebee:    
Contact         :                                                                                        b           

queryA       532:VKYLDLTNNRLDFDNASALTELSDLEVLDLSYNSHYFRIAGVTHHLEFIQNFTNLKVLNLSHNNIYTLTDKYNLESKSLVELVFSGNRLDILWNDDDNRY: 631
                :****************************************************************************************************:
4r08_C_1     510:VKYLDLTNNRLDFDNASALTELSDLEVLDLSYNSHYFRIAGVTHHLEFIQNFTNLKVLNLSHNNIYTLTDKYNLESKSLVELVFSGNRLDILWNDDDNRY: 609
SecStr          :  EEE  S       TTTTTT TT  EEE  S HHHHT TTS    GGGGG SS  EEE  SS     SS      SS  EEE TTS HHHHT TT  TT:    
ExpBur          :bebbbbbebebebeeeebbebbeebbbbbbbebbeebeeeeeebbbbbbeebeebeebbbbebbbebbbeeeebebebbeebbbbbbebeebbeeeeeeb:    
Contact         :           b b                           bb                                                         

queryA       632:ISIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTELHINDNMLKFFNWTLLQQFPRLELLDLRGNKLLFLTDSLSDFTSSLRTLLLSHNRISHLPSGF: 731
                :****************************************************************************************************:
4r08_C_1     610:ISIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTELHINDNMLKFFNWTLLQQFPRLELLDLRGNKLLFLTDSLSDFTSSLRTLLLSHNRISHLPSGF: 709
SecStr          :TTTTTT TT  EEE  SS  S   HHHHHTS TT SEEE  SS  S   GGGGGG TT  EEE  SS      S HHHH SS  EEE  SS      TTT:    
ExpBur          :bebbeebeebeebbbbebebeebbeebbebbbeebeebbbbebebeebebebbeebeebeebbbeebebeebbeebeebbebbebbbbbebebeebeeeb:    

queryA       732:LSEVSSLKHLDLSSNLLKTINKSALETKTTTKLSMLELHGNPFECTCDIGDFRRWMDEHLNVKIPRLVDVICASPGDQRGKSIV: 815
                :********************           *****************************************************:
4r08_C_1     710:LSEVSSLKHLDLSSNLLKTIXXXXXXXXXXXKLSMLELHGNPFECTCDIGDFRRWMDEHLNVKIPRLVDVICASPGDQRGKSIV: 793
SecStr          :TTT TT  EEE TTS  S  -----------   EEE TT EE  SGGGHHHHHHHHS TTSB   GGG EE  SGGG S    :    
ExpBur          :eeeeeebeebbbbebebeee-----------ebeebbbeebebebeeebeebeeebeeeeebebeebbebebeeeeeeeeebbe:

Protein Model on 4r08_C_1_KA_1 (TEMPLATE: 4r08 )

Input Residue Numbers for Focused Sites