[pdbjlvh2]Protein Model on 6wml_C_1_IA

Protein Model on 6wml_C_1_IA_1 (TEMPLATE: 6wml )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:2]

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MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(TLR8_HUMAN)	C 1 (C)	polymer(polypeptide(L)) [681 aa]	Toll-like receptor 8 :TLR8_HUMAN
2	b		IA 1 (C)	non-polymer(NAG)	2-acetamido-2-deoxy-beta-D-glucopyranose	522S 545D 546N (identity: 100.0 %/88.2 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:6wml_C_1 identity=88.2%

queryA        31:SRSYPCDEKKQNDSVIAECSNRRLQEVPQTVGKYVTELDLSDNFITHITNESFQGLQNLTKINLNHNPNVQHQNGNPGIQSNGLNITDGAFLNLKNLREL: 130
                :**********************************************************************            ******************:
6wml_C_1       9:SRSYPCDEKKQNDSVIAECSNRRLQEVPQTVGKYVTELDLSDNFITHITNESFQGLQNLTKINLNHNPNVXXXXXXXXXXXXGLNITDGAFLNLKNLREL: 108
SecStr          :    SSEEE  SS  EEE  SS  SS  TTS TT SEEE  SS   EE SSSS S  S  EEE  S S  ------------  EE TTTTTT TT  EE:    
ExpBur          :eeeebbeeeeeeeebbbebeebebeebbeebeeebbebebbebebeebeeebbeebeebeebbbbebeee------------ebebeebbbeebeebebb:    

queryA       131:LLEDNQLPQIPSGLPESLTELSLIQNNIYNITKEGISRLINLKNLYLAWNCYFNKVCEKTNIEDGVFETLTNLELLSLSFNSLSHVPPKLPSSLRKLFLS: 230
                :****************************************************************************************************:
6wml_C_1     109:LLEDNQLPQIPSGLPESLTELSLIQNNIYNITKEGISRLINLKNLYLAWNCYFNKVCEKTNIEDGVFETLTNLELLSLSFNSLSHVPPKLPSSLRKLFLS: 208
SecStr          :E  SS  SS  SS  TT SEEE  SS   EE HHHHTT TT  EEE  SSS TT      EE TTTTTT TT  EEE  SS  SS  SS  TT  EEE T:    
ExpBur          :bbbebebeebbeebbebbeebbbbbbebbebbeebbbebeebebbebbbbbbeeeebeebeeeebbbeebeebebbbbbbbbbeebbeebbebbeebebb:    

queryA       231:NTQIKYISEEDFKGLINLTLLDLSGNCPRCFNAPFPCVPCDGGASINIDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNMPHLKVLDLEFNYLVGEIASG: 330
                :****************************************************************************************************:
6wml_C_1     209:NTQIKYISEEDFKGLINLTLLDLSGNCPRCFNAPFPCVPCDGGASINIDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNMPHLKVLDLEFNYLVGEIASG: 308
SecStr          :TS   EE GGGGTT TT  EEE TTSS   TT SS     GGG   EE TTTTTT TT  EEE TTS  S   GGGGTT TT  EEE  SS  HHHHHH :    
ExpBur          :bbebeebbeeebeebeebebbbbbbbbbbbeeeebebeebeeeeebebeeebbeebeebeebbbbbbbbeebeeebbeebeebebbbbbebebbebbeeb:    

queryA       331:AFLTMLPRLEILDLSFNYIKGSYPQHINISRNFSKLLSLRALHLRGYVFQELREDDFQPLMQLPNLSTINLGINFIKQIDFKLFQNFSNLEIIYLSENRI: 430
                :****************************************************************************************************:
6wml_C_1     309:AFLTMLPRLEILDLSFNYIKGSYPQHINISRNFSKLLSLRALHLRGYVFQELREDDFQPLMQLPNLSTINLGINFIKQIDFKLFQNFSNLEIIYLSENRI: 408
SecStr          :GGGGG TT  EEE  S   TT   SS    GGGGG TT  EEE TT   SEE GGGGGGGTT TT  EEE  SS   EE GGGGTTSS   EEE  SS  :    
ExpBur          :ebbeebeebeebbbbbbbeeeeeeeebebbebbeebeebebbbbbbbbbeebeeebbebbbebeebbbbbbbebebeebebebbeebeebebbbbbebeb:    

queryA       431:SPLVKDTRQSYANSSSFQRHIRKRRSTDFEFDPHSNFYHFTRPLIKPQCAAYGKALDLSLNSIFFIGPNQFENLPDIACLNLSANSNAQVLSGTEFSAIP: 530
                :***                         ************************************************************************:
6wml_C_1     409:SPLXXXXXXXXXXXXXXXXXXXXXXXXXFEFDPHSNFYHFTRPLIKPQCAAYGKALDLSLNSIFFIGPNQFENLPDIACLNLSANSNAQVLSGTEFSAIP: 508
SecStr          :   -------------------------  S TTS SSS  S SS HHHHTTSEEEE  SS   S  TTTTTT   EEEEE TTS       S TTTTST:    
ExpBur          :eee-------------------------eebebeeebbbeeeebbeeebeeeeebbbbbebebeebbeebbeebbebbbbbbbebebebebebebbeebe:    
Contact         :                                                                                           b        

queryA       531:HVKYLDLTNNRLDFDNASALTELSDLEVLDLSYNSHYFRIAGVTHHLEFIQNFTNLKVLNLSHNNIYTLTDKYNLESKSLVELVFSGNRLDILWNDDDNR: 630
                :****************************************************************************************************:
6wml_C_1     509:HVKYLDLTNNRLDFDNASALTELSDLEVLDLSYNSHYFRIAGVTHHLEFIQNFTNLKVLNLSHNNIYTLTDKYNLESKSLVELVFSGNRLDILWNDDDNR: 608
SecStr          :T  EEE  SS      TTTTTT TT  EEE  S HHHHT TTS    GGGGG SS  EEE TT      SS    EESS  EEE TTS HHHHT TT  T:    
ExpBur          :ebebbbbbebebebeeeebbebbeebbbbbbbebbeebeeeeeebbbebbeebeebeebebbebbbebbbeeeebebebbeebbbbbbbbeebbeeeeee:    
Contact         :              bb                                                                                    

queryA       631:YISIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTELHINDNMLKFFNWTLLQQFPRLELLDLRGNKLLFLTDSLSDFTSSLRTLLLSHNRISHLPSG: 730
                :**************************************************************************       ****************   :
6wml_C_1     609:YISIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTELHINDNMLKFFNWTLLQQFPRLELLDLRGNKLLFLTXXXXXXXSSLRTLLLSHNRISHLXXX: 708
SecStr          :TTTTTTEETT  EEE  SS  S   HHHHHTS TT SEEE  SS  S   GGGGGG TT  EEE  SS      -------    EEE  S      ---:    
ExpBur          :bbebbebbeebeebbbbebebeebbeebbebbbeebeebbbbebebeebebebeeebeebebbbbeebebeeee-------eeebeebbbebbbeee---:    

queryA       731:FLSEVSSLKHLDLSSNLLKTINKSALETKTTTKLSMLELHGNPFECTCDIGDFRRWMDEHLNVKIPRLVDVI: 802
                :       *********                 *********                    **********:
6wml_C_1     709:XXXXXXXLKHLDLSSNXXXXXXXXXXXXXXXXXLSMLELHGNXXXXXXXXXXXXXXXXXXXXVKIPRLVDVI: 780
SecStr          :-------  EEE    -----------------  EEE TT -------------------- B   GGG  :    
ExpBur          :-------eeeebebee-----------------eebebebee--------------------eeeebebbee:

Protein Model on 6wml_C_1_IA_1 (TEMPLATE: 6wml )

Input Residue Numbers for Focused Sites