Protein Model on 5ijb_C_1_H_1 (TEMPLATE: 5ijb )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:2]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)		 type description a(query A)
1 a A(TLR8_HUMAN) C 1 (B) polymer(polypeptide(L)) [592 aa] Toll-like receptor 4, Variable lymphocyte receptor B chimera :TLR4_MOUSE:Q4G1L2_EPTBU
2 b H 1 (H) branched(oligosaccharide) 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose 636K(L) 661N (identity: 50.0 %/29.1 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:5ijb_C_1 identity=29.1%
queryA       259:RCFNAPFPCVPCDGGASI-NID----------RFAFQNLTQLRYLNLSSTSLRKINAAWFKNMPHLKVLDLEFNYLVGEIASGAF--LTMLPRLEILDLS: 345
                : *       ** *   *  ***             * *   *  * **      *         **  * *  *        * *  ** *  *      :
5ijb_C_1      13:QCMDQKLSKVPDDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP-IQSFSPGSFSGLTSLENLVAVETK: 111
SecStr          :E  S   SS  SS  SS SEEE  S    SB TTTT S  S S EE TT    BB TTSSTT  S S EE  S  -  B  TTTTTT  S SEEE TTS :    
ExpBur          :ebeeeeeeeebeebeeebeebebbebebeebebebbeebeebeebbbbebebeebeeebbebbeebbebbbebbe-beebeeebbeebeebebbbbbebe:    

queryA       346:FNYIKGSYP-------QHINISRNF----------SKLLSLRALHLRGYVFQELREDDFQPLMQLPNLS-TINLGINFIKQIDFKLFQNFSNLEIIYLSE: 427
                :      * *          *   **          * *  *    *     *     * * *   *          * *  *    **     *      :
5ijb_C_1     112:LASLE-SFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGN: 210
SecStr          :   TT-TS  TT  S  EEE  SS        GGGGG TT  EEE TTS   EE TTTTHHHHT TT   EEE TT    EE TTTTTTEEEEEEEEES :    
ExpBur          :bebbe-ebebeebeebeebebbebebeebebbeebeebeebeebbbbebebeebbeebbebbeebeeeebbbbbbbbebeebeeebbeebebebbbbebb:    

queryA       428:NRISPLVKDTRQSYA----------------NSSSFQRHIRKRRSTDFEFDPHSNFY--HFTRPLIKPQCAAYGKALDLSLNSIFFIG--PNQFE-----: 502
                :   *   *   *  *                *   *   *      *   *     *   *     *  * *   *  *   **      *  *      :
5ijb_C_1     211:FNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGL-CDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLS: 309
SecStr          : S HHHHHHHHHTTTTEEEEEEEEE  TTS   S   GGGGTTT-TTSEEEEEEE   SS  GGGSS GGGTT SEEEEES          TT   SEEE:    
ExpBur          :beeeeebeebbeebeebebebbbbbbeeeeeebeebebebbebb-eebebebbebbbbeebeeebbebebbbebebbbbbbbebeebeebeeebebeebb:    

queryA       503:------------NLPDIACLNLSANSNAQVLSGTEFSAIPHVKYLDLTNNRLDFDNASALTELS--DLEVLDLSYNSHYFRIAGVTHHLEFIQNFTNLKV: 588
                :             **    * *  *            * *   ****  * * *        *    *  **** *      *              *  :
5ijb_C_1     310:IIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKV---ALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSAN-------FMGLEELQH: 399
SecStr          :EES   SS      TT  EEEEES SS       ---  TT  EEE TTS   EEEE  GGGT  S   EEE  S SEEEE S ------- TT TT   :    
ExpBur          :beebebeebbebebeebeebbbbebeeebebeeb---ebeebeebbbbebebebeebbbeebbbbeebeebbbbebeebebeee-------beebeebee:    

queryA       589:LNLSHNNIYTLTDKYNLESKSLVELVFSGNRLDILWNDDDNRYISIFKGLKNLTRLDLSLNRLK-HIPNEAFLNLPASLTELHINDNMLKFFNWTLLQQF: 687
                :*   *      *        **  *      ***           ** **  *  *    *  *       * *    ** *      *    *      :
5ijb_C_1     400:LDFQHSTLKRVTEFSAF--LSLEKLLY----LDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFAN-TTNLTFLDLSKCQLEQISWGVFDTL: 492
SecStr          :EE TTSEEETTTTS TT--TT TT  E----EE TTS  EE  TTTTTT TT  EEE TT EEGGGEE S  TT- TT  EEE TTS   EE TTTTTT :    
ExpBur          :bbbeebebeebeeebbb--ebbeebeb----bbbbebebebeeebbbebbeebeebebbebbbeeeebbebbee-beebeebbbbebebeebeeebbeeb:    
Contact         :                                               b                         b                          

queryA       688:PRLELLDLRGNKLLFLTDSLSDFTSSLRTLLLSHNRISHLPSGFLSEVSSLKHLDLSSNLLKTINKSALETKTTTKLSMLELHGNPFECTCDIGDF-RRW: 786
                : ** **    * ****  *      **  * *  *     * *      **                              ** **  * *   *   **:
5ijb_C_1     493:HRLQLLNMSHNNLLFLDSSHYNQLYSLKELALDTNQLKSVPDGIFDRLTSLQK--------------------------IWLHTNPWDCSCPRIDYLSRW: 566
SecStr          :SS  EEE  SS      TTTTTT TT  EEE  SS      TTSSTT TT  E--------------------------EE  SS EE  TTTTHHHHHH:    
ExpBur          :eebebbebbebebeebeeebbeebeebeebbbbbbebeebeeebbeebeebee--------------------------bebeebebebeeeebebbbeb:    

queryA       787:MDE: 789
                :   :
5ijb_C_1     567:LNK: 569
SecStr          :HHH:    
ExpBur          :bee:

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