[pdbjlvh2]Protein Model on 3kj4_C_1_A

Protein Model on 3kj4_C_1_A_1 (TEMPLATE: 3kj4 )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(TLR8_HUMAN)	C 1 (A)	polymer(polypeptide(L)) [283 aa]	Reticulon-4 receptor :RTN4R_RAT
2	b		A 1 (L)	polymer(polypeptide(L)) [219 aa]	Fab fragment 1D9 light chain	214S(Q) 235K(S) 236Y 276I(A) 299L (identity: 40.0 %/31.8 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:3kj4_C_1 identity=31.8%

queryA       212:SLSHVPPKLPSSLRKLFLSNTQIKYISEEDFKGLINLTLLDLSGNCPRCFNAPFPCVPCDGGASINIDRFAFQNLTQLRYLNLSSTS-LRKINAAWFKNM: 310
                : *  **   * *    **    * *     *    *** * *  *                 *   **  **  ** *  * **    **      *   :
3kj4_C_1      21:GLQAVPTGIPASSQRIFLHGNRISYVPAASFQSCRNLTILWLHSN-----------------ALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGL: 103
SecStr          :  SS  TT  TT SEEE TTS   EE TTSSTT TT  EEE  SS-----------------  SEE TTTTTT TT  EEE  S TT     TTTTTT :    
ExpBur          :eeeebbeebeeebeebbbbebebeebeeeebeebeebbbbebbeb-----------------bbebbeeebbeebeebeebbbbebeebeebeeebbeeb:    
Contact         :  b                    bb                                       b                       b           

queryA       311:PHLKVLDLEFNYLVGEIASGAFLTMLPRLEILDLSFNYIKGSYPQHINISRNFSKLLSLRALHLRGYVFQELREDDFQPLMQLPNLSTINLGINFIKQID: 410
                : **  * *    *  *   * *   *  *  * *  *      *        *  *  *  * * *       *  *  *     *    *  *      :
3kj4_C_1     104:GHLHTLHLDRCGLQ-ELGPGLF-RGLAALQYLYLQDNNLQ-ALPDN-----TFRDLGNLTHLFLHGNRIPSVPEHAFRGLH---SLDRLLLHQNHVARVH: 192
SecStr          :TT  EEE  SS   -   TTTT-TT TT  EEE  SS   -   TT-----TTTT TT  EEE  SS   EE TTTTTT T---T  EEE  SS   EE :    
ExpBur          :eebebbbbbebbbe-ebbeebb-eebeebeebebbebebe-ebeee-----bbeebeebebbbbbebebeebeeebbbbbe---ebeebbbbebebeebe:    

queryA       411:FKLFQNFSNLEIIYLSENRISPLVKDT: 437
                :   *     *   **  *  * *    :
3kj4_C_1     193:PHAFRDLGRLMTLYLFANNLSMLPAEV: 219
SecStr          :TTTTTT TT  EEE  SS      TTS:    
ExpBur          :eebbebbeebebbebbebebeebeeeb:

Protein Model on 3kj4_C_1_A_1 (TEMPLATE: 3kj4 )

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