[pdbjlvh2]Protein Model on 7ytx_B_1_W

Protein Model on 7ytx_B_1_W_1 (TEMPLATE: 7ytx )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(TLR8_HUMAN)	B 1 (B)	polymer(polypeptide(L)) [750 aa]	Toll-like receptor 8 :TLR8_HUMAN
2	b		W 1 (B)	non-polymer(NAG)	2-acetamido-2-deoxy-beta-D-glucopyranose	522S 546N (identity: 100.0 %/94.9 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:7ytx_B_1 identity=94.9%

queryA        32:RSYPCDEKKQNDSVIAECSNRRLQEVPQTVGKYVTELDLSDNFITHITNESFQGLQNLTKINLNHNPNVQHQNGNPGIQSNGLNITDGAFLNLKNLRELL: 131
                :*********************************************************************           ********************:
7ytx_B_1      10:RSYPCDEKKQNDSVIAECSNRRLQEVPQTVGKYVTELDLSDNFITHITNESFQGLQNLTKINLNHNPNVXXXXXXXXXXXNGLNITDGAFLNLKNLRELL: 109
SecStr          :  SSSEEEEETTEEEEE TTS  SS  S   TTEEEEE  SS   EE TTTT S TT  EE   S S  -----------   EE TTSSTT S   EEE:    
ExpBur          :beebbbeeeeeebbebebbebeeeebbeebeeebbebebbebebeebeeebbeebeebeebebbebbee-----------ebbebeebbbeebeebeebb:    

queryA       132:LEDNQLPQIPSGLPESLTELSLIQNNIYNITKEGISRLINLKNLYLAWNCYFNKVCEKTNIEDGVFETLTNLELLSLSFNSLSHVPPKLPSSLRKLFLSN: 231
                :****************************************************************************************************:
7ytx_B_1     110:LEDNQLPQIPSGLPESLTELSLIQNNIYNITKEGISRLINLKNLYLAWNCYFNKVCEKTNIEDGVFETLTNLELLSLSFNSLSHVPPKLPSSLRKLFLSN: 209
SecStr          :  SS  SS  SS  TT  EEE  SS   EE HHHHTT TT  EEE  SSSSS SS SS EE TTTTTS TT  EEE  SS  SS  SS  TT  EEE  S:    
ExpBur          :bbebebeebbeebbebbeebbbbbbbbeebeeebbeebeebebbbbbbbbbeeeebeebeeeebbbeebeebebbbbbbbbbeebbeebbeebeebebbb:    

queryA       232:TQIKYISEEDFKGLINLTLLDLSGNCPRCFNAPFPCVPCDGGASINIDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNMPHLKVLDLEFNYLVGEIASGA: 331
                :****************************************************************************************************:
7ytx_B_1     210:TQIKYISEEDFKGLINLTLLDLSGNCPRCFNAPFPCVPCDGGASINIDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNMPHLKVLDLEFNYLVGEIASGA: 309
SecStr          :S   EE SGGGTT TT  EEE  SSS   SS SS    SSSS   EE GGGGSS  S  EEE  SS  SS  SSTTTT TT  EEE  SS  HHHHHS S:    
ExpBur          :bebeebbeeebeebeebbbbbbbbbbbbeeeeebeeeebeeeeebebeeebbeebeebeebbbbbbbbeebebbbbeebeebebbbbbbbebeebbeebe:    

queryA       332:FLTMLPRLEILDLSFNYIKGSYPQHINISRNFSKLLSLRALHLRGYVFQELREDDFQPLMQLPNLSTINLGINFIKQIDFKLFQNFSNLEIIYLSENRIS: 431
                :****************************************************************************************************:
7ytx_B_1     310:FLTMLPRLEILDLSFNYIKGSYPQHINISRNFSKLLSLRALHLRGYVFQELREDDFQPLMQLPNLSTINLGINFIKQIDFKLFQNFSNLEIIYLSENRIS: 409
SecStr          :GGGS SS  EEE  S   TT   SS    GGGTT TT  EEE TT   SEE TTTTHHHHT TT  EEE  SS  SEE GGGGGS SS  EEE  SS   :    
ExpBur          :bbeebeebeebbbbbbbeeeeeeeebebbeebeebeebebbbbebbbbeebeeebbebbbebeebbbbbbbbbebeebebebbeebeebebbbbbebebe:    

queryA       432:PLVKDTRQSYANSSSFQRHIRKRRSTDFEFDPHSNFYHFTRPLIKPQCAAYGKALDLSLNSIFFIGPNQFENLPDIACLNLSANSNAQVLSGTEFSAIPH: 531
                :******                       ***********************************************************************:
7ytx_B_1     410:PLVKDTXXXXXXXXXXXXXXXXXXXXXXXFDPHSNFYHFTRPLIKPQCAAYGKALDLSLNSIFFIGPNQFENLPDIACLNLSANSNAQVLSGTEFSAIPH: 509
SecStr          :   S  -----------------------  TTS SSS  S SS HHHHTSS EEE  SS  SS  TTTTTT    SEEE  SS    B  S TTTT   :    
ExpBur          :beeeee-----------------------eebeeeebeeeeeebeeebeeeeebbbbbebebeebbebbbeebbebbbbbbbebebbbebebebbeebee:    
Contact         :                                                                                          b         

queryA       532:VKYLDLTNNRLDFDNASALTELSDLEVLDLSYNSHYFRIAGVTHHLEFIQNFTNLKVLNLSHNNIYTLTDKYNLESKSLVELVFSGNRLDILWNDDDNRY: 631
                :****************************************************************************************************:
7ytx_B_1     510:VKYLDLTNNRLDFDNASALTELSDLEVLDLSYNSHYFRIAGVTHHLEFIQNFTNLKVLNLSHNNIYTLTDKYNLESKSLVELVFSGNRLDILWNDDDNRY: 609
SecStr          :  EEE  SB  B  STTTTTT TT  EEE  SB  S   TTSSS  GGGTT SS  EEE TT      SS S    SS  EEE  SS HHHHHT TT   :    
ExpBur          :bebbbbbebebbbbebebbebbeebbbbbbbebebeeeeeeebbbbebbeebeebeebbbbebebebbebeeebebebbeebbbbbbbbbebbebeeeeb:    
Contact         :              b                                                                                     

queryA       632:ISIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTELHINDNMLKFFNWTLLQQFPRLELLDLRGNKLLFLTDSLSDFTSSLRTLLLSHNRISHLPSGF: 731
                :****************************************************************************************************:
7ytx_B_1     610:ISIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTELHINDNMLKFFNWTLLQQFPRLELLDLRGNKLLFLTDSLSDFTSSLRTLLLSHNRISHLPSGF: 709
SecStr          :SSTTTT TT  EEE  SS  S   HHHHTTS TT SEEE  SS      GGGGGG TT  EEE  SS      S  TTT SS  EEE  SS      S S:    
ExpBur          :bbbbebbeebebbbbbebebeebbeebbeebbebbeebbbbebebeebebebbeebeebebbbbeebebeebeeeebebbeebebbbbbebebeebbeee:    

queryA       732:LSEVSSLKHLDLSSNLLKTINKSALETKTTTKLSMLELHGNPFECTCDIGDFRRWMDEHLNVKIPRLVDVICASPGDQRGKSIVSLELTT: 821
                :************************      ************************************************************:
7ytx_B_1     710:LSEVSSLKHLDLSSNLLKTINKSAXXXXXXTKLSMLELHGNPFECTCDIGDFRRWMDEHLNVKIPRLVDVICASPGDQRGKSIVSLELTT: 799
SecStr          :S S    SEEE  SS  S   S  ------    EEE  S  EE SSTTHHHHHHHHHS SSB SSGGG BEEESTTTTTSBSSS     :    
ExpBur          :eeeebbbeebbbbebebeebeeeb------eebeebbbbebebebeeebbebbebbeeeeebebeebbebebeeeeebeeebbbebeeee:

Protein Model on 7ytx_B_1_W_1 (TEMPLATE: 7ytx )

Input Residue Numbers for Focused Sites