Protein Model on 3wpc_B_1_W_1 (TEMPLATE: 3wpc )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)		 type description a(query A)
1 a A(TLR8_HUMAN) B 1 (B) polymer(polypeptide(L)) [749 aa] Toll-like receptor 9 :Q2EEY0_HORSE
2 b W 1 (B) non-polymer(GOL) GLYCEROL 732L(F) 733S(A) 735V(A) 736S(T) 738L 739K(R) 756L(F) 759K(L) 762T(S) 764L (identity: 20.0 %/36.6 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:3wpc_B_1 identity=36.6%
queryA        35:PCDEKKQNDSVIAECSNRRLQEVPQTVGKY----VTELDLSDNFITHITNESFQGLQNLTKINLNHNPNVQHQNGNPGIQSNGLNITDGAFLNLKNLREL: 130
                :**            *    *  **          ** * *  * * *     *  * ** * **  *         *        *    **    * **:
3wpc_B_1      13:PCELQPHG---LVNCNWLFLKSVPHFSAAAPRDNVTSLSLLSNRIHHLHDSDFAQLSNLQKLNLKWN--CPPAGLSPMHFPCHMTIEPNTFLAVPTLEEL: 107
SecStr          :TSEEEGGG---EEE TTS  SS     TTS GGG  EEE TT    EE TTTTTT TT  EEE TTS--B  TTTSTT      EE TTTTTT TT  EE:    
ExpBur          :ebeeeeeb---ebebeeeebeebbebeeebebeebebbbbbbbebeebeeebbeebeebeebebeeb--bbbeebbeeeeebebeeeeebbeebeebeeb:    

queryA       131:LLEDNQLPQIPSGLPESLTELSLIQNNIYNITKEGISRLINLKNLYLAWNCYFNKVCEKT-NIEDGVFETLTNLELLSLSFNSLSHVPPKLPSSLRKLFL: 229
                : *  *     *  ** **  * *   **          *  *  **   ***    *        *    * **  ***  * *  **  ** **  * *:
3wpc_B_1     108:NLSYNGITTVPA-LPSSLVSLILSRTNILQLDPTSLTGLHALRFLYMDGNCYYKNPCGRALEVAPGALLGLGNLTHLSLKYNNLTTVPRSLPPSLEYLLL: 206
SecStr          :E  SB  SS   -  TT  EEE TTS   EE TTTTTT TT  EEE   SSBTTB  SS  EE TTTTTT TT  EEE  SS  SS  SS  TT SEEE :    
ExpBur          :bbbbbbbeebbe-bbeebbbbbbbbbebbebeeebbeebeebeebebbbbbbeebeeeebbebeebbbeebeebbbbbbeebebeebbeebbeebebbbb:    

queryA       230:SNTQIKYISEEDFKGLINLTLLDLSGNCPRCFNAPFPCVPCDGGASINIDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNMPHLKVLDLEFNYLVGEIAS: 329
                :*   *     **   *  *  **  *** **  *  *** *            *  *  *  * *   **   *  **     * ****  * *   *  :
3wpc_B_1     207:SYNHIVTLAPEDLANLTALRVLDVGGNCRRCDHARNPCVECPHKFP-QLHSDTFSHLSRLEGLVLKDSSLYQLNPRWFRGLGNLTVLDLSENFLYDCITK: 305
SecStr          :TTS   EE GGGGTT TT SEEE TTSS  GGG SS      TT  -EE TTTTTT TT  EEE  SS  S   THHHHT TT  EEE TTSS TTGGGT:    
ExpBur          :bbbebbebbbebbeebeebeebbbbbbbbbbeeeeeeeeebeeebe-eeeeebbeebeebebbbbebbbbeebeeebbeebeebeebbbbbbbbbebbee:    

queryA       330:GAFLTMLPRLEILDLSFNYIKGSYPQHINISRNFSKLLSLRALHLRGYVFQELREDDFQPLMQLPNLSTINLGINFIKQIDFKLFQNFSNLEIIYLSENR: 429
                :      *  *  * ***** *     *      *  ****  *   *  *  *     ***  ** *    *  *** *     *  *  *  * ** **:
3wpc_B_1     306:TKAFQGLAQLRRLNLSFNYHKKVSFAHLTLAPSFGSLLSLQELDMHGIFFRSLSQKTLQPLARLPMLQRLYLQMNFINQAQLGIFKDFPGLRYIDLSDNR: 405
SecStr          :  TTTT TT  EEE TT   SS  BS     GGGGG TT  EEE TTS BSEE HHHHGGGTT TT  EEE  SS   EE GGGGTT SS  EEE  SS :    
ExpBur          :bebbeebeebeebebbbbbeeeeebeebebbebbebbeebeebbbbbbbbeebeeebbebbbebeebeebbbbebebeebebbbbeebeebebbbbbebe:    

queryA       430:ISPLVKDTRQSYANSSSFQRHIRKRR----------STDFEFDPHSNFYHFTRPLIKPQCAAYGKALDLSLNSIFFIGPNQFENLPDIACLNLSANSNAQ: 519
                :**  *                               * **                 * *      **** *      *  *  *    ** ** **  *:
3wpc_B_1     406:ISGAVEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSEDF----------------MPSCKNLSFTLDLSRNNLVTVQPEMFAQLSRLQCLRLSHNSISQ: 489
SecStr          :  SS  ------------------------------ TTT----------------S  STTSS EEE  SS  SS  GGGGTT TT SEEE TTS    :    
ExpBur          :bebeee------------------------------eeeb----------------bebbeebebbbbbbebebeebeeebbeebeebebbebbebebeb:    

queryA       520:VLSGTEFSAIPHVKYLDLTNNRLDFDNASALTELSDLEVLDLSYNSHYFRIAGVTHHLEFIQNFTNLKVLNLSHNNIYTLTDKYNLESKSLVELVFSGNR: 619
                :   *  *        ***  * **       ***  ** *******  *   ** * * *      *  * * ** *        * * **  * **** :
3wpc_B_1     490:AVNGSQFVPLTSLQVLDLSHNKLDLYHGRSFTELPRLEALDLSYNSQPFSMRGVGHNLSFVAQLPTLRYLSLAHNGIHSRVSQ-QLCSTSLWALDFSGNS: 588
SecStr          :   S SSTT TT  EEE  SS      TTTTTT TT  EEE  S HHHHTSTT     GGGGG TT  EEE TTS   SSS S-  EESS  EEE  SS :    
ExpBur          :ebebebbeebeebbbbbbbebebebeeeebbebbeebebbbbbebeebbeeeeeebebebbeebeebebbbbbebebbeebbe-ebebebbebbbbbbbb:    

queryA       620:LDILWNDDDNRYISIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTELHINDNMLKFFNWTLLQQFPRLELLDLRGNKLLFLTDSLSDFTSSLRTLLL: 719
                :*   *   *  *   * **  * ***** ***         *** **  *    * * ****  *   * ** *** ** *  *          *  *  :
3wpc_B_1     589:LSQMWAEGD-LYLRFFQGLRSLIRLDLSQNRLHTLLPCTLGNLPKSLQLLRLRNNYLAFFNWSSLTLLPNLETLDLAGNQLKALSNGSLPSGTQLQRLDV: 687
SecStr          :HHHHHTSTT-TTTTTTTEETT  EEE  SS  S   HHHHTTS TT  EEE TTS  S   GGGGGGSTT  EEE TTS   EE SS S TT    EEE :    
ExpBur          :beebbeeee-ebeebbbbbeebbbbbbbebebeeeeeebbebbbeebebbebeebebeebebebbeebeebebbbbbbbebebbeeeebbeebebeebeb:    

queryA       720:SHNRISHLPSGFLSEVSSLKHLDLSSNLLKTINKSALETKTTTKLSMLELHGNPFECTCDIGDFRRWMDEHLNVK--IPRLVD-VICASPGDQRGKSIVS: 816
                :* * *     **      *  * ** * * *   *         *  *    **  * *         *  * *    * *   * * ***   * **  :
3wpc_B_1     688:SRNSIIFVVPGFFALATRLRELNLSANALRTVEPSWFGFLAGS-LEVLDVSANPLHCACGAA----FVDFLLQVQAAVPGLPSRVKCGSPGQLQGRSIFA: 782
SecStr          :TTS   EE TTTTTT TT  EEE  SS  S   GGGGTT  TT- SEEE  S  EE  TT H----HHHHHHHTGGGSTTHHHH BEEESGGGBTSBTTS:    
ExpBur          :bebebeebeeebbeebeebeebebbebebeebebebbeeebee-beebbbbebebebeeebe----bbebbbebeebbebbbbebebbbeeeeeeebbbe:    
Contact         :            bb bb bb                b  b  b b                                                       

queryA       817:LEL: 819
                :  *:
3wpc_B_1     783:QDL: 785
SecStr          :S  :    
ExpBur          :eee:

Input Residue Numbers for Focused Sites

ex) 2,15,123