Protein Model on 7r52_B_1_T_1 (TEMPLATE: 7r52 )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)		 type description a(query A)
1 a A(TLR8_HUMAN) B 1 (B) polymer(polypeptide(L)) [733 aa] Toll-like receptor 8 :TLR8_HUMAN
2 b T 1 (B) non-polymer(NAG) 2-acetamido-2-deoxy-beta-D-glucopyranose 587K 608K 611V 640N (identity: 100.0 %/93.0 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:7r52_B_1 identity=93.0%
queryA        31:SRSYPCDEKKQNDSVIAECSNRRLQEVPQTVGKYVTELDLSDNFITHITNESFQGLQNLTKINLNHNPNVQHQNGNPGIQSNGLNITDGAFLNLKNLREL: 130
                :**********************************************************************            ******************:
7r52_B_1       5:SRSYPCDEKKQNDSVIAECSNRRLQEVPQTVGKYVTELDLSDNFITHITNESFQGLQNLTKINLNHNPNVXXXXXXXXXXXXGLNITDGAFLNLKNLREL: 104
SecStr          :   SSSEEE GGGSEEEE  SS  SS  TTS TTEEEEE TTS   EE TTSSTT TT  EEE  SSS  ------------  EE TTSSTT TT  EE:    
ExpBur          :eeeebbeeeebeeebebebeebebeebbeebbeebbebebbebebeebeeebbeebeebeebbbbebeee------------ebeeeebbbeebeebbeb:    

queryA       131:LLEDNQLPQIPSGLPESLTELSLIQNNIYNITKEGISRLINLKNLYLAWNCYFNKVCEKTNIEDGVFETLTNLELLSLSFNSLSHVPPKLPSSLRKLFLS: 230
                :****************************************************    ********************************************:
7r52_B_1     105:LLEDNQLPQIPSGLPESLTELSLIQNNIYNITKEGISRLINLKNLYLAWNCYXXXXCEKTNIEDGVFETLTNLELLSLSFNSLSHVPPKLPSSLRKLFLS: 204
SecStr          :E  SS  SS  SS  TT  EEE  SS   EE HHHHTT TT  EEE  SS  ----  S EE TTTTTT TT  EEE  SS  SS  SS  TT  EEE T:    
ExpBur          :bbbebbbeebbeebbeebeebbbbebebeebeeebbeebeebbbbebbebbe----eeebeeeebbbeebeebebbbbbbbbbeebbeebbeebbebebb:    

queryA       231:NTQIKYISEEDFKGLINLTLLDLSGNCPRCFNAPFPCVPCDGGASINIDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNMPHLKVLDLEFNYLVGEIASG: 330
                :****************************************************************************************************:
7r52_B_1     205:NTQIKYISEEDFKGLINLTLLDLSGNCPRCFNAPFPCVPCDGGASINIDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNMPHLKVLDLEFNYLVGEIASG: 304
SecStr          :TS   EE TTTTTT TT  EEE TTSS   SS SS     GGG   EE TTSSTT TT  EEE  SS  S   GGGGTT TT  EEE  SS  HHHHHS :    
ExpBur          :bbebeebebeebeebeebebbbbbbbbbbeeeeebeeeeeeeeeebebebebbeebeebeebbbbbbbbeebebebbeebeebebbbbbbbebbebbeeb:    

queryA       331:AFLTMLPRLEILDLSFNYIKGSYPQHINISRNFSKLLSLRALHLRGYVFQELREDDFQPLMQLPNLSTINLGINFIKQIDFKLFQNFSNLEIIYLSENRI: 430
                :****************************************************************************************************:
7r52_B_1     305:AFLTMLPRLEILDLSFNYIKGSYPQHINISRNFSKLLSLRALHLRGYVFQELREDDFQPLMQLPNLSTINLGINFIKQIDFKLFQNFSNLEIIYLSENRI: 404
SecStr          :SGGGG TT  EEE  S   TT   SB    GGGGG TT  EEE TT   SEE TGGGTTTTT SS  EEE  S   SEE GGGGTT SS  EEE  SS  :    
ExpBur          :ebbeebebbeebbbbbbeeeeeeeeebebbeebebbeebebbbbbbbbbbebeeebbebbbebeebebbbbbebebeebebbbbeebeebeebbbbebbb:    

queryA       431:SPLVKDTRQSYANSSSFQRHIRKRRSTDFEFDPHSNFYHFTRPLIKPQCAAYGKALDLSLNSIFFIGPNQFENLPDIACLNLSANSNAQVLSGTEFSAIP: 530
                :***                            *********************************************************************:
7r52_B_1     405:SPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXDPHSNFYHFTRPLIKPQCAAYGKALDLSLNSIFFIGPNQFENLPDIACLNLSANSNAQVLSGTEFSAIP: 504
SecStr          :   ---------------------------- TTS SSS  S SS HHHHTTSEEEE  SS  SS  TTTTTT   EEEEE  SS    B  S TTSSST:    
ExpBur          :eee----------------------------eeeeeebbeeeeebeeebeeeeebbbbbebebeebbeebbeebbebbbbbbbebebebebebebbeebe:    

queryA       531:HVKYLDLTNNRLDFDNASALTELSDLEVLDLSYNSHYFRIAGVTHHLEFIQNFTNLKVLNLSHNNIYTLTDKYNLESKSLVELVFSGNRLDILWNDDDNR: 630
                :***********************************         ********************************************************:
7r52_B_1     505:HVKYLDLTNNRLDFDNASALTELSDLEVLDLSYNSXXXXXXXXXHHLEFIQNFTNLKVLNLSHNNIYTLTDKYNLESKSLVELVFSGNRLDILWNDDDNR: 604
SecStr          :T SEEE  SS  B  STTTTTT TT  EEE TT  ---------   GGGGG SS  EEE TT       S  S   SS  EEE TTS HHHHS SS GG:    
ExpBur          :ebebbbbbebebebeeeebbebbeebbbbbbbebe---------ebbebbeebeebeebebbebebeebeebeebbbebbeebbbbebbbeebbeeebee:    
Contact         :                                                        b                    b  b                   

queryA       631:YISIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTELHINDNMLKFFNWTLLQQFPRLELLDLRGNKLLFLTDSLSDFTSSLRTLLLSHNRISHLPSG: 730
                :****************************************************************************************************:
7r52_B_1     605:YISIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTELHINDNMLKFFNWTLLQQFPRLELLDLRGNKLLFLTDSLSDFTSSLRTLLLSHNRISHLPSG: 704
SecStr          :GTTTTTT TT  EEE TTS  S   HHHHHTS TT SEEE  SS  S   GGGGGG TT  EEE  SS      TTHHHH S   EEE  SS      TT:    
ExpBur          :beebbeebeebeebbbbebebeebeeebbebbbeebeebbbbebebeebebebbeebebbebbbbeebbbeeebeebeeebeebbebbbbebebeebbee:    
Contact         :         b                                                                                          

queryA       731:FLSEVSSLKHLDLSSNLLKTINKSALETKTTTKLSMLELHGNPFECTCDIGDFRRWMDEHLNVKIPRLVDVICASPGDQRGKSIVSLE: 818
                :*****************************  *********************************************************:
7r52_B_1     705:FLSEVSSLKHLDLSSNLLKTINKSALETKXXTKLSMLELHGNPFECTCDIGDFRRWMDEHLNVKIPRLVDVICASPGDQRGKSIVSLE: 792
SecStr          :TTSS TT  EEE TTS      TTTT   --    EEE TT  EE SGGGHHHHHHHHH TTSB   GGG BEEE TTTTTSBTTS  :    
ExpBur          :bebebeebbbbbbbebebeeeeeebbeee--eebeebebeebebbbeeebeebeebeeebeebeeebbbebebeeeeeeeebbbeeee:

Input Residue Numbers for Focused Sites

ex) 2,15,123