Protein Model on 8pfi_B_1_S_1 (TEMPLATE: 8pfi )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)		 type description a(query A)
1 a A(TLR8_HUMAN) B 1 (B) polymer(polypeptide(L)) [734 aa] Toll-like receptor 8 :TLR8_HUMAN
2 b S 1 (B) non-polymer(NAG) 2-acetamido-2-deoxy-beta-D-glucopyranose 367L 368S 370R 394P 395N (identity: 100.0 %/93.1 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:8pfi_B_1 identity=93.1%
queryA        31:SRSYPCDEKKQNDSVIAECSNRRLQEVPQTVGKYVTELDLSDNFITHITNESFQGLQNLTKINLNHNPNVQHQNGNPGIQSNGLNITDGAFLNLKNLREL: 130
                :**********************************************************************            ******************:
8pfi_B_1       5:SRSYPCDEKKQNDSVIAECSNRRLQEVPQTVGKYVTELDLSDNFITHITNESFQGLQNLTKINLNHNPNVXXXXXXXXXXXXGLNITDGAFLNLKNLREL: 104
SecStr          :    SSEEEE SSSEEEE  SS  SS  S S TT SEEE  SS   EE TTSS S TT  EEE  SSS  ------------  EE TTSSTT SS  EE:    
ExpBur          :ebeebbeeeeeeeeebbebeebebeebbeebbeebbebebbebebeebeeebbeebeebeebbbbebeee------------ebebeebbbeebeebeeb:    

queryA       131:LLEDNQLPQIPSGLPESLTELSLIQNNIYNITKEGISRLINLKNLYLAWNCYFNKVCEKTNIEDGVFETLTNLELLSLSFNSLSHVPPKLPSSLRKLFLS: 230
                :*****************************************************   ********************************************:
8pfi_B_1     105:LLEDNQLPQIPSGLPESLTELSLIQNNIYNITKEGISRLINLKNLYLAWNCYFXXXCEKTNIEDGVFETLTNLELLSLSFNSLSHVPPKLPSSLRKLFLS: 204
SecStr          :E  SS  SS  TT  TT SEEE  SS   EE TTTTTT TT SEEE TTSS  ---  S EE TTTTTT TT  EEE  SS  SS  SS  TT SEEE T:    
ExpBur          :bbbebebeebbeebbebbbebbbbebebeebeeebbbebeebeebebbebbee---eeebebeebbbeebeebebbbbbbbbbeebbeebbebbeebebb:    

queryA       231:NTQIKYISEEDFKGLINLTLLDLSGNCPRCFNAPFPCVPCDGGASINIDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNMPHLKVLDLEFNYLVGEIASG: 330
                :****************************************************************************************************:
8pfi_B_1     205:NTQIKYISEEDFKGLINLTLLDLSGNCPRCFNAPFPCVPCDGGASINIDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNMPHLKVLDLEFNYLVGEIASG: 304
SecStr          :TS   EE TTTTTT TT  EEE TTSS   SS SS     TTS   EE TTTTSS TT  EEE TTS  S   GGGGTT TT  EEE  SS  HHHHHT :    
ExpBur          :bbebeebbeeebeebeebbbbbbbbbbbbeeeeebeeeebeeeeebebeeebbeebeebeebbbbbbbbeebebbbbeebeebebbbbbbbebbebbeeb:    

queryA       331:AFLTMLPRLEILDLSFNYIKGSYPQHINISRNFSKLLSLRALHLRGYVFQELREDDFQPLMQLPNLSTINLGINFIKQIDFKLFQNFSNLEIIYLSENRI: 430
                :****************************************************************************************************:
8pfi_B_1     305:AFLTMLPRLEILDLSFNYIKGSYPQHINISRNFSKLLSLRALHLRGYVFQELREDDFQPLMQLPNLSTINLGINFIKQIDFKLFQNFSNLEIIYLSENRI: 404
SecStr          :GGGGG TT  EEE  S   TT   SB    GGGGG TT  EEE TT   SEE TTTTGGGTT SS  EEE  S    EE GGGGTTSSS  EEE  SS  :    
ExpBur          :ebbeebeebeebbbbbbeeeeeeeeebebbeebbebeebebbbbbbbbbbebeeebbebbbebeebebbbbbebebeebebebbeebeebeebbbbebeb:    
Contact         :                                    bb b                       bb                                   

queryA       431:SPLVKDTRQSYANSSSFQRHIRKRRSTDFEFDPHSNFYHFTRPLIKPQCAAYGKALDLSLNSIFFIGPNQFENLPDIACLNLSANSNAQVLSGTEFSAIP: 530
                :***                            *********************************************************************:
8pfi_B_1     405:SPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXDPHSNFYHFTRPLIKPQCAAYGKALDLSLNSIFFIGPNQFENLPDIACLNLSANSNAQVLSGTEFSAIP: 504
SecStr          :   ---------------------------- TTS SSS  S SS HHHHTTSEEEE  SS  SS  TTTTTT   EEEEE TTS    B  S TTSSST:    
ExpBur          :ebe----------------------------eeeeeebbeeeebbeeebeeeeebbbbbebebeebbeebbeebbebbbbbbbebebebebebebbeebe:    

queryA       531:HVKYLDLTNNRLDFDNASALTELSDLEVLDLSYNSHYFRIAGVTHHLEFIQNFTNLKVLNLSHNNIYTLTDKYNLESKSLVELVFSGNRLDILWNDDDNR: 630
                :***********************************           ******************************************************:
8pfi_B_1     505:HVKYLDLTNNRLDFDNASALTELSDLEVLDLSYNSXXXXXXXXXXXLEFIQNFTNLKVLNLSHNNIYTLTDKYNLESKSLVELVFSGNRLDILWNDDDNR: 604
SecStr          :T SEEE  S   B  STTTTTT TT  EEE TT  ----------- GGGGG SS  EEE TT       S  S EESS  EEE TTS HHHHS SS TT:    
ExpBur          :ebebbbbbebebebeeeebbbbbeebebbbbbebe-----------bebbeebeebeebebbebebeebeeeeebebebbeebbbbbbbbeebbeeeeee:    

queryA       631:YISIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTELHINDNMLKFFNWTLLQQFPRLELLDLRGNKLLFLTDSLSDFTSSLRTLLLSHNRISHLPSG: 730
                :****************************************************************************************************:
8pfi_B_1     605:YISIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTELHINDNMLKFFNWTLLQQFPRLELLDLRGNKLLFLTDSLSDFTSSLRTLLLSHNRISHLPSG: 704
SecStr          :STTTTTEETT  EEE  SS  S   HHHHHTS TT SEEE  SS  S   GGGGGG TT  EEE  SS      S GGGT SS  EEE  SS      TT:    
ExpBur          :bbebbebbeebeebbbbebebeebeeebbebbbebbeebbbbebebeebebebbeebeebebbbbeebebeebbeebeebbebbeebbbbebebeebbeb:    

queryA       731:FLSEVSSLKHLDLSSNLLKTINKSALETKTTTKLSMLELHGNPFECTCDIGDFRRWMDEHLNVKIPRLVDVICASPGDQRGKSIVSLE: 818
                :****************************************************************************************:
8pfi_B_1     705:FLSEVSSLKHLDLSSNLLKTINKSALETKTTTKLSMLELHGNPFECTCDIGDFRRWMDEHLNVKIPRLVDVICASPGDQRGKSIVSLE: 792
SecStr          :SSSS TT  EEE  SS      TTTS  SS     EEE TT  EE SGGGHHHHHHHHH SSSB   GGGSBEEESTTTBTSBTTS  :    
ExpBur          :bbbebebbebbbbbebebeebeeebbeeeeebebeebbbbebebebeeebeebbebbeebeebebeebbbbebeeeeeeeeebbbeee:

Input Residue Numbers for Focused Sites

ex) 2,15,123