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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(TLR8_HUMAN) | B 1 (B) | polymer(polypeptide(L)) [733 aa] | Toll-like receptor 8 :TLR8_HUMAN | |
2 | b | S 1 (B) | non-polymer(NAG) | 2-acetamido-2-deoxy-beta-D-glucopyranose | 391M 416N (identity: 100.0 %/93.0 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:7r52_B_1 identity=93.0% |
queryA 31:SRSYPCDEKKQNDSVIAECSNRRLQEVPQTVGKYVTELDLSDNFITHITNESFQGLQNLTKINLNHNPNVQHQNGNPGIQSNGLNITDGAFLNLKNLREL: 130 :********************************************************************** ******************: 7r52_B_1 5:SRSYPCDEKKQNDSVIAECSNRRLQEVPQTVGKYVTELDLSDNFITHITNESFQGLQNLTKINLNHNPNVXXXXXXXXXXXXGLNITDGAFLNLKNLREL: 104 SecStr : SSSEEE GGGSEEEE SS SS TTS TTEEEEE TTS EE TTSSTT TT EEE SSS ------------ EE TTSSTT TT EE: ExpBur :eeeebbeeeebeeebebebeebebeebbeebbeebbebebbebebeebeeebbeebeebeebbbbebeee------------ebeeeebbbeebeebbeb: queryA 131:LLEDNQLPQIPSGLPESLTELSLIQNNIYNITKEGISRLINLKNLYLAWNCYFNKVCEKTNIEDGVFETLTNLELLSLSFNSLSHVPPKLPSSLRKLFLS: 230 :**************************************************** ********************************************: 7r52_B_1 105:LLEDNQLPQIPSGLPESLTELSLIQNNIYNITKEGISRLINLKNLYLAWNCYXXXXCEKTNIEDGVFETLTNLELLSLSFNSLSHVPPKLPSSLRKLFLS: 204 SecStr :E SS SS SS TT EEE SS EE HHHHTT TT EEE SS ---- S EE TTTTTT TT EEE SS SS SS TT EEE T: ExpBur :bbbebbbeebbeebbeebeebbbbebebeebeeebbeebeebbbbebbebbe----eeebeeeebbbeebeebebbbbbbbbbeebbeebbeebbebebb: queryA 231:NTQIKYISEEDFKGLINLTLLDLSGNCPRCFNAPFPCVPCDGGASINIDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNMPHLKVLDLEFNYLVGEIASG: 330 :****************************************************************************************************: 7r52_B_1 205:NTQIKYISEEDFKGLINLTLLDLSGNCPRCFNAPFPCVPCDGGASINIDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNMPHLKVLDLEFNYLVGEIASG: 304 SecStr :TS EE TTTTTT TT EEE TTSS SS SS GGG EE TTSSTT TT EEE SS S GGGGTT TT EEE SS HHHHHS : ExpBur :bbebeebebeebeebeebebbbbbbbbbbeeeeebeeeeeeeeeebebebebbeebeebeebbbbbbbbeebebebbeebeebebbbbbbbebbebbeeb: queryA 331:AFLTMLPRLEILDLSFNYIKGSYPQHINISRNFSKLLSLRALHLRGYVFQELREDDFQPLMQLPNLSTINLGINFIKQIDFKLFQNFSNLEIIYLSENRI: 430 :****************************************************************************************************: 7r52_B_1 305:AFLTMLPRLEILDLSFNYIKGSYPQHINISRNFSKLLSLRALHLRGYVFQELREDDFQPLMQLPNLSTINLGINFIKQIDFKLFQNFSNLEIIYLSENRI: 404 SecStr :SGGGG TT EEE S TT SB GGGGG TT EEE TT SEE TGGGTTTTT SS EEE S SEE GGGGTT SS EEE SS : ExpBur :ebbeebebbeebbbbbbeeeeeeeeebebbeebebbeebebbbbbbbbbbebeeebbebbbebeebebbbbbebebeebebbbbeebeebeebbbbebbb: Contact : b b queryA 431:SPLVKDTRQSYANSSSFQRHIRKRRSTDFEFDPHSNFYHFTRPLIKPQCAAYGKALDLSLNSIFFIGPNQFENLPDIACLNLSANSNAQVLSGTEFSAIP: 530 :*** *********************************************************************: 7r52_B_1 405:SPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXDPHSNFYHFTRPLIKPQCAAYGKALDLSLNSIFFIGPNQFENLPDIACLNLSANSNAQVLSGTEFSAIP: 504 SecStr : ---------------------------- TTS SSS S SS HHHHTTSEEEE SS SS TTTTTT EEEEE SS B S TTSSST: ExpBur :eee----------------------------eeeeeebbeeeeebeeebeeeeebbbbbebebeebbeebbeebbebbbbbbbebebebebebebbeebe: queryA 531:HVKYLDLTNNRLDFDNASALTELSDLEVLDLSYNSHYFRIAGVTHHLEFIQNFTNLKVLNLSHNNIYTLTDKYNLESKSLVELVFSGNRLDILWNDDDNR: 630 :*********************************** ********************************************************: 7r52_B_1 505:HVKYLDLTNNRLDFDNASALTELSDLEVLDLSYNSXXXXXXXXXHHLEFIQNFTNLKVLNLSHNNIYTLTDKYNLESKSLVELVFSGNRLDILWNDDDNR: 604 SecStr :T SEEE SS B STTTTTT TT EEE TT --------- GGGGG SS EEE TT S S SS EEE TTS HHHHS SS GG: ExpBur :ebebbbbbebebebeeeebbebbeebbbbbbbebe---------ebbebbeebeebeebebbebebeebeebeebbbebbeebbbbebbbeebbeeebee: queryA 631:YISIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTELHINDNMLKFFNWTLLQQFPRLELLDLRGNKLLFLTDSLSDFTSSLRTLLLSHNRISHLPSG: 730 :****************************************************************************************************: 7r52_B_1 605:YISIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTELHINDNMLKFFNWTLLQQFPRLELLDLRGNKLLFLTDSLSDFTSSLRTLLLSHNRISHLPSG: 704 SecStr :GTTTTTT TT EEE TTS S HHHHHTS TT SEEE SS S GGGGGG TT EEE SS TTHHHH S EEE SS TT: ExpBur :beebbeebeebeebbbbebebeebeeebbebbbeebeebbbbebebeebebebbeebebbebbbbeebbbeeebeebeeebeebbebbbbebebeebbee: queryA 731:FLSEVSSLKHLDLSSNLLKTINKSALETKTTTKLSMLELHGNPFECTCDIGDFRRWMDEHLNVKIPRLVDVICASPGDQRGKSIVSLE: 818 :***************************** *********************************************************: 7r52_B_1 705:FLSEVSSLKHLDLSSNLLKTINKSALETKXXTKLSMLELHGNPFECTCDIGDFRRWMDEHLNVKIPRLVDVICASPGDQRGKSIVSLE: 792 SecStr :TTSS TT EEE TTS TTTT -- EEE TT EE SGGGHHHHHHHHH TTSB GGG BEEE TTTTTSBTTS : ExpBur :bebebeebbbbbbbebebeeeeeebbeee--eebeebebeebebbbeeebeebeebeeebeebeeebbbebebeeeeeeeebbbeeee: |