Protein Model on 3w3g_B_1_S_1 (TEMPLATE: 3w3g )

CurrentView:HTML5 Change to:[JAVA] DOWNLOAD:
[sequence-replaced 3D model] [for PyMOL]
[3D template]
[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]

MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)		 type description a(query A)
1 a A(TLR8_HUMAN) B 1 (B) polymer(polypeptide(L)) [743 aa] Toll-like receptor 8 :TLR8_HUMAN
2 b S 1 (B) non-polymer(NAG) 2-acetamido-2-deoxy-beta-D-glucopyranose 384E 388Q 391M 392Q 416N (identity: 100.0 %/94.6 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:3w3g_B_1 identity=94.6%
queryA        32:RSYPCDEKKQNDSVIAECSNRRLQEVPQTVGKYVTELDLSDNFITHITNESFQGLQNLTKINLNHNPNVQHQNGNPGIQSNGLNITDGAFLNLKNLRELL: 131
                :********************************************************************             *******************:
3w3g_B_1      10:RSYPCDEKKQNDSVIAECSNRRLQEVPQTVGKYVTELDLSDNFITHITNESFQGLQNLTKINLNHNPNXXXXXXXXXXXXXGLNITDGAFLNLKNLRELL: 109
SecStr          :   SSEEEESSS EEEE  SS  SS  S S TT SEEE  SS   EE TTTS S SS  EEE  S   -------------  EE TTTTTT TT  EEE:    
ExpBur          :eeebbbbeeeeeebebebbebebeebbeebbeebbebebbebebeebeeebbeebeebeebbbbebee-------------ebebeebbbeebeebeebb:    

queryA       132:LEDNQLPQIPSGLPESLTELSLIQNNIYNITKEGISRLINLKNLYLAWNCYFNKVCEKTNIEDGVFETLTNLELLSLSFNSLSHVPPKLPSSLRKLFLSN: 231
                :****************************************************************************************************:
3w3g_B_1     110:LEDNQLPQIPSGLPESLTELSLIQNNIYNITKEGISRLINLKNLYLAWNCYFNKVCEKTNIEDGVFETLTNLELLSLSFNSLSHVPPKLPSSLRKLFLSN: 209
SecStr          :  SS  SS  SS  TT SEEE  SS   EE HHHHTT TT SEEE  SSSSS SS SS EE TTTTGGG S  EEE  SS  SS  SS  TT SEEE TT:    
ExpBur          :bbebebeebbbebbebbeebbbbebebeebeeebbbebeebebbebbbbbbeeeebeebeeeebbbeebeebebbbbbbbbbeebbeebbebbeebebbb:    

queryA       232:TQIKYISEEDFKGLINLTLLDLSGNCPRCFNAPFPCVPCDGGASINIDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNMPHLKVLDLEFNYLVGEIASGA: 331
                :****************************************************************************************************:
3w3g_B_1     210:TQIKYISEEDFKGLINLTLLDLSGNCPRCFNAPFPCVPCDGGASINIDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNMPHLKVLDLEFNYLVGEIASGA: 309
SecStr          :S   EE HHHHTT TT  EEE TTSS   SS SS     SSS   EE TTTTTT TT  EEE TTS  S   GGGGTT TT  EEE  SS  HHHHHS G:    
ExpBur          :bebeebbeeebeebeebebbbbbbbbbbeeeeebeeeebeeeeebebeeebbeebeebeebbbbbbbbeebebebbeebeebebbbbbbbebbebbeebe:    

queryA       332:FLTMLPRLEILDLSFNYIKGSYPQHINISRNFSKLLSLRALHLRGYVFQELREDDFQPLMQLPNLSTINLGINFIKQIDFKLFQNFSNLEIIYLSENRIS: 431
                :****************************************************************************************************:
3w3g_B_1     310:FLTMLPRLEILDLSFNYIKGSYPQHINISRNFSKLLSLRALHLRGYVFQELREDDFQPLMQLPNLSTINLGINFIKQIDFKLFQNFSNLEIIYLSENRIS: 409
SecStr          :GGGG TT  EEE  S   TT   SB    GGGGG TT  EEE TT   SEE GGGGHHHHT TT  EEE  SS   EE GGGGGS SS  EEE  SS   :    
ExpBur          :bbeebeebeebbbbbbeeeeeeeeebebbeebeebeebebbbbbbbbbbebeeebbebbbebeebbbbbbbbbebeebebebbeebeebebbbbbebebe:    
Contact         :                                                    b   b  bb                       b               

queryA       432:PLVKDTRQSYANSSSFQRHIRKRRSTDFEFDPHSNFYHFTRPLIKPQCAAYGKALDLSLNSIFFIGPNQFENLPDIACLNLSANSNAQVLSGTEFSAIPH: 531
                :****                         ***********************************************************************:
3w3g_B_1     410:PLVKXXXXXXXXXXXXXXXXXXXXXXXXXFDPHSNFYHFTRPLIKPQCAAYGKALDLSLNSIFFIGPNQFENLPDIACLNLSANSNAQVLSGTEFSAIPH: 509
SecStr          :    -------------------------  TTS  SS  S SS HHHHTTS EEE TTS   S  TTTTTT    SEEE  SS    B  S TTTTSTT:    
ExpBur          :beee-------------------------eebeeeebbeeeebbeeebeeeeebbbbbebebeebbeebbeebbebbbbbbbbbebebebebebbeebee:    

queryA       532:VKYLDLTNNRLDFDNASALTELSDLEVLDLSYNSHYFRIAGVTHHLEFIQNFTNLKVLNLSHNNIYTLTDKYNLESKSLVELVFSGNRLDILWNDDDNRY: 631
                :****************************************************************************************************:
3w3g_B_1     510:VKYLDLTNNRLDFDNASALTELSDLEVLDLSYNSHYFRIAGVTHHLEFIQNFTNLKVLNLSHNNIYTLTDKYNLESKSLVELVFSGNRLDILWNDDDNRY: 609
SecStr          : SEEE  SS  B  STTTTTT TT  EEE TT   SS  TTTSS  GGGGG SS  EEE TT        SS   BSS  EEE  SS HHHHHT TT TT:    
ExpBur          :bebbbbbebebbbbeeebbbbbeebebbbbbebebeeeeeeebbbbebbeebeebeebbbbebebeebeeeeebebebbeebbbbbbbbbebbebeeeeb:    

queryA       632:ISIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTELHINDNMLKFFNWTLLQQFPRLELLDLRGNKLLFLTDSLSDFTSSLRTLLLSHNRISHLPSGF: 731
                :****************************************************************************************************:
3w3g_B_1     610:ISIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTELHINDNMLKFFNWTLLQQFPRLELLDLRGNKLLFLTDSLSDFTSSLRTLLLSHNRISHLPSGF: 709
SecStr          :TTTTTTBTT  EEE TTS  S   HHHHHTS TT SEEE  SS  S   GGGGGG TT  EEE  SS      S GGGT SS  EEE  SS      S  :    
ExpBur          :beebebbeebeebbbbebebeebbeebbebbbebbeebbbbebebeebebebbeebeebeebbbeebebeebbeebeebbebbeebbbbebebeebbeee:    

queryA       732:LSEVSSLKHLDLSSNLLKTINKSALETKTTTKLSMLELHGNPFECTCDIGDFRRWMDEHLNVKIPRLVDVICASPGDQRGKSIVS: 816
                :    *********************************************************************************:
3w3g_B_1     710:XXXXSSLKHLDLSSNLLKTINKSALETKTTTKLSMLELHGNPFECTCDIGDFRRWMDEHLNVKIPRLVDVICASPGDQRGKSIVS: 794
SecStr          :----   SEEE  SS  S   GGG     SS   EEE TT  EE SSTTHHHHHHHHH TTSB   GGGSBEEESTTTTT BTT :    
ExpBur          :----ebbeebbbbebebeebeeebbeeeeeeebeebbbbebebebeeebeebeebbeebeebebbebbbbebeeeeebeeebbee:

Input Residue Numbers for Focused Sites

ex) 2,15,123