Protein Model on 7r53_B_1_Q_1 (TEMPLATE: 7r53 )

CurrentView:HTML5 Change to:[JAVA] DOWNLOAD:
[sequence-replaced 3D model] [for PyMOL]
[3D template]
[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]

MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)		 type description a(query A)
1 a A(TLR8_HUMAN) B 1 (B) polymer(polypeptide(L)) [736 aa] Toll-like receptor 8 :TLR8_HUMAN
2 b Q 1 (B) non-polymer(NAG) 2-acetamido-2-deoxy-beta-D-glucopyranose 522S 546N 548S (identity: 100.0 %/93.4 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:7r53_B_1 identity=93.4%
queryA        31:SRSYPCDEKKQNDSVIAECSNRRLQEVPQTVGKYVTELDLSDNFITHITNESFQGLQNLTKINLNHNPNVQHQNGNPGIQSNGLNITDGAFLNLKNLREL: 130
                :**********************************************************************            ******************:
7r53_B_1       5:SRSYPCDEKKQNDSVIAECSNRRLQEVPQTVGKYVTELDLSDNFITHITNESFQGLQNLTKINLNHNPNVXXXXXXXXXXXXGLNITDGAFLNLKNLREL: 104
SecStr          :    SSEEEE SSSEEEE  SS  SS  S S TT SEEE  SS   EE TTSS S TT  EEE  SSS  ------------  EE TTTTSS TT  EE:    
ExpBur          :ebeebbeeeeeeeeebbebeebebeebbeebeeebbebebbebebeebeeebbeebeebeebbbbebeee------------ebebeeebbeebeebeeb:    

queryA       131:LLEDNQLPQIPSGLPESLTELSLIQNNIYNITKEGISRLINLKNLYLAWNCYFNKVCEKTNIEDGVFETLTNLELLSLSFNSLSHVPPKLPSSLRKLFLS: 230
                :**************************************************        ******************************************:
7r53_B_1     105:LLEDNQLPQIPSGLPESLTELSLIQNNIYNITKEGISRLINLKNLYLAWNXXXXXXXXKTNIEDGVFETLTNLELLSLSFNSLSHVPPKLPSSLRKLFLS: 204
SecStr          :E  SS  SS  SS  TT SEEE  SS   EE TTTSTT TT SEEE    --------  EE TTSGGG TT  EEE  SS   S  SS  TT  EEE T:    
ExpBur          :bbbebebeebbeebbebbbebbbbebebeebeeebbbebeebebbebbeb--------ebeebebbbeebeebebbbbbebebeebbeebbeebeebebb:    

queryA       231:NTQIKYISEEDFKGLINLTLLDLSGNCPRCFNAPFPCVPCDGGASINIDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNMPHLKVLDLEFNYLVGEIASG: 330
                :****************************************************************************************************:
7r53_B_1     205:NTQIKYISEEDFKGLINLTLLDLSGNCPRCFNAPFPCVPCDGGASINIDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNMPHLKVLDLEFNYLVGEIASG: 304
SecStr          :TS   EE GGGSSS TT  EEE TTSS   SS SS     SSS   EE TTTTTT TT  EEE  SS  S   GGGGTT TT  EEE  SS  HHHHHH :    
ExpBur          :bbebeebeeeebeebeebbbbbbbbbbbbeeeeebeeeebeeeeebebeeebbeebeebeebbbbbbbbeebeebbbeebeebebbbbbbbebeebbeeb:    

queryA       331:AFLTMLPRLEILDLSFNYIKGSYPQHINISRNFSKLLSLRALHLRGYVFQELREDDFQPLMQLPNLSTINLGINFIKQIDFKLFQNFSNLEIIYLSENRI: 430
                :****************************************************************************************************:
7r53_B_1     305:AFLTMLPRLEILDLSFNYIKGSYPQHINISRNFSKLLSLRALHLRGYVFQELREDDFQPLMQLPNLSTINLGINFIKQIDFKLFQNFSNLEIIYLSENRI: 404
SecStr          :GGGGG TT  EEE  S   TT   SS    GGGGG TT  EEE TT   SEE TGGGGGGTT SS  EEE  S   SEE GGGGGG SS  EEE TT   :    
ExpBur          :ebbeebeebeebbbbbbeeeeeeeeebebbeebebbeebebbbbbbbbbbebeeebbebbbebeebebbbbbbbebeebebebbeebeebeebbbbebeb:    

queryA       431:SPLVKDTRQSYANSSSFQRHIRKRRSTDFEFDPHSNFYHFTRPLIKPQCAAYGKALDLSLNSIFFIGPNQFENLPDIACLNLSANSNAQVLSGTEFSAIP: 530
                :***                            *********************************************************************:
7r53_B_1     405:SPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXDPHSNFYHFTRPLIKPQCAAYGKALDLSLNSIFFIGPNQFENLPDIACLNLSANSNAQVLSGTEFSAIP: 504
SecStr          :   ---------------------------- TTS SSS  S SS HHHHTTSEEEE  SSS SS  TTSSTT   EEEEE  SS    B  S TTSSST:    
ExpBur          :ebe----------------------------eeeeeebbeeeebbeeebeeeeebbbbbebebeebbeebbeebbebbbbbbbebebbbebeeebbeebe:    
Contact         :                                                                                           b        

queryA       531:HVKYLDLTNNRLDFDNASALTELSDLEVLDLSYNSHYFRIAGVTHHLEFIQNFTNLKVLNLSHNNIYTLTDKYNLESKSLVELVFSGNRLDILWNDDDNR: 630
                :***********************************************************************************************    *:
7r53_B_1     505:HVKYLDLTNNRLDFDNASALTELSDLEVLDLSYNSHYFRIAGVTHHLEFIQNFTNLKVLNLSHNNIYTLTDKYNLESKSLVELVFSGNRLDILWNXXXXR: 604
SecStr          :T SEEE  S   B  STTTTTT TT  EEE TT   SS  TTTSS  GGGGG SS  EEE TTS      SS S B SS  EEE TTS HHHHT ---- :    
ExpBur          :ebebbbbbebebbbbeeebbbbbeebbbbbbbebebeeeeeeebbbbbbbeebeebeebbbbebebeebbebebbebebbeebbbbebebeebbe----e:    
Contact         :               b b                                                                                  

queryA       631:YISIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTELHINDNMLKFFNWTLLQQFPRLELLDLRGNKLLFLTDSLSDFTSSLRTLLLSHNRISHLPSG: 730
                :****************************************************************************************************:
7r53_B_1     605:YISIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTELHINDNMLKFFNWTLLQQFPRLELLDLRGNKLLFLTDSLSDFTSSLRTLLLSHNRISHLPSG: 704
SecStr          : TTSSTB TT  EEE  SS  S   HHHHHTS TT SEEE  SS  S   GGGGGG TT  EEE  SS      S GGGT S   EEE  SS      TT:    
ExpBur          :beebbebbeebeebbbbebebeebbeebbebbbebbeebbbbebebeebebebbeebeebebbbbeebebeebbeebeebbebbbebbbbebebeebbeb:    

queryA       731:FLSEVSSLKHLDLSSNLLKTINKSALETKTTTKLSMLELHGNPFECTCDIGDFRRWMDEHLNVKIPRLVDVICASPGDQRGKSIVSLE: 818
                :****************************************************************************************:
7r53_B_1     705:FLSEVSSLKHLDLSSNLLKTINKSALETKTTTKLSMLELHGNPFECTCDIGDFRRWMDEHLNVKIPRLVDVICASPGDQRGKSIVSLE: 792
SecStr          :HHHH TT  EEE TTS      TTTT  SS     EEE TT  EE SGGGHHHHHHHHH TTSB   GGG BEEESTTTBTSBGGG  :    
ExpBur          :bbbebeebebbbbbebebeebeeebbeeeeeeebeebbbbebebebeeebeebbebbeebeebebeebbbbebeeeeebeeebbbeee:

Input Residue Numbers for Focused Sites

ex) 2,15,123