[pdbjlvh2]Protein Model on 6kya_B_1_Q

Protein Model on 6kya_B_1_Q_1 (TEMPLATE: 6kya )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(TLR8_HUMAN)	B 1 (B)	polymer(polypeptide(L)) [730 aa]	Toll-like receptor 8 :TLR8_HUMAN
2	b		Q 1 (B)	non-polymer(NAG)	2-acetamido-2-deoxy-beta-D-glucopyranose	608K 611V 640N (identity: 100.0 %/92.9 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:6kya_B_1 identity=92.9%

queryA        33:SYPCDEKKQNDSVIAECSNRRLQEVPQTVGKYVTELDLSDNFITHITNESFQGLQNLTKINLNHNPNVQHQNGNPGIQSNGLNITDGAFLNLKNLRELLL: 132
                :********************************************************************           *********************:
6kya_B_1      11:SYPCDEKKQNDSVIAECSNRRLQEVPQTVGKYVTELDLSDNFITHITNESFQGLQNLTKINLNHNPNVXXXXXXXXXXXNGLNITDGAFLNLKNLRELLL: 110
SecStr          :  SSEEEEETTEEEEE  SS  SS  S   TTEEEEE  SS   EE TTTTTT TT  EEE TT S  -----------   EE TTTTTT TT  EEE :    
ExpBur          :eebbbeeeeeeeebbebeebebeebbeebeeebbebebbebebeebeeebbeebeebeebbbbebeee-----------ebbebeebbbeebeebeebbb:    

queryA       133:EDNQLPQIPSGLPESLTELSLIQNNIYNITKEGISRLINLKNLYLAWNCYFNKVCEKTNIEDGVFETLTNLELLSLSFNSLSHVPPKLPSSLRKLFLSNT: 232
                :****************************************************************************************************:
6kya_B_1     111:EDNQLPQIPSGLPESLTELSLIQNNIYNITKEGISRLINLKNLYLAWNCYFNKVCEKTNIEDGVFETLTNLELLSLSFNSLSHVPPKLPSSLRKLFLSNT: 210
SecStr          : SS  SS  SS  TT SEEE  SS   EE TTTSTT TT SEEE  SSS SSSS SS EE TTTTTT TT  EEE  SS  SS  S   TT SEEE  SS:    
ExpBur          :bebebeebbbebbebbeebbbbebebeebeeebbbebeebeebbbbbbbeeeeebeebebeebbbeebeebebbbbbbbbbeebbeebbebbeebebbeb:    

queryA       233:QIKYISEEDFKGLINLTLLDLSGNCPRCFNAPFPCVPCDGGASINIDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNMPHLKVLDLEFNYLVGEIASGAF: 332
                :****************************************************************************************************:
6kya_B_1     211:QIKYISEEDFKGLINLTLLDLSGNCPRCFNAPFPCVPCDGGASINIDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNMPHLKVLDLEFNYLVGEIASGAF: 310
SecStr          :   EE TTTTTT TT  EEE TTSS   SS SS    SSTT   EE TTTTTT TT  EEE  SS  S   GGGGTT TT  EEE  SS  HHHHHS GG:    
ExpBur          :ebeebbeeebeebeebbbbbbbbbbbbbeeeeeeeeebeeeeebebeeebbeebeebeebbbbbbbbeebebbbbeebeebebbbbbebbbbebbeebeb:    

queryA       333:LTMLPRLEILDLSFNYIKGSYPQHINISRNFSKLLSLRALHLRGYVFQELREDDFQPLMQLPNLSTINLGINFIKQIDFKLFQNFSNLEIIYLSENRISP: 432
                :****************************************************************************************************:
6kya_B_1     311:LTMLPRLEILDLSFNYIKGSYPQHINISRNFSKLLSLRALHLRGYVFQELREDDFQPLMQLPNLSTINLGINFIKQIDFKLFQNFSNLEIIYLSENRISP: 410
SecStr          :GGG TT  EEE  S   TT   SB    GGGGG TT  EEE TT   SEE GGGGGGGGG TT  EEE  S   SEE GGGGGG SS  EEE  SS    :    
ExpBur          :beebeebeebbbbbbeeeeeeeeebebbeebeebeebebbbbbbbbbbebeeebbebbbebeebbbbbbbbbebeebebebbeebeebebbbbbebebeb:    

queryA       433:LVKDTRQSYANSSSFQRHIRKRRSTDFEFDPHSNFYHFTRPLIKPQCAAYGKALDLSLNSIFFIGPNQFENLPDIACLNLSANSNAQVLSGTEFSAIPHV: 532
                :**                          ************************************************************************:
6kya_B_1     411:LVXXXXXXXXXXXXXXXXXXXXXXXXXXFDPHSNFYHFTRPLIKPQCAAYGKALDLSLNSIFFIGPNQFENLPDIACLNLSANSNAQVLSGTEFSAIPHV: 510
SecStr          :  --------------------------  SSS SSS  S SS HHHHTTS EEE TTS  SS  TTSSTT    SEEE  SS    B  S TTTTSTT :    
ExpBur          :ee--------------------------eeeeeeebbeeeebbeeebeeeeebbbbbebebeebbeebbeebbebbbbbbbebebebebebebbeebeeb:    

queryA       533:KYLDLTNNRLDFDNASALTELSDLEVLDLSYNSHYFRIAGVTHHLEFIQNFTNLKVLNLSHNNIYTLTDKYNLESKSLVELVFSGNRLDILWNDDDNRYI: 632
                :****************************************************************************************************:
6kya_B_1     511:KYLDLTNNRLDFDNASALTELSDLEVLDLSYNSHYFRIAGVTHHLEFIQNFTNLKVLNLSHNNIYTLTDKYNLESKSLVELVFSGNRLDILWNDDDNRYI: 610
SecStr          : EEE  S   B  STTTTTT TT  EEE TT   TT  S   B  GGGGG SS  EEE TT     BSS    EESS  EEE  SS HHHHHT TT TTT:    
ExpBur          :ebbbbbebbbebeeeebbebbeebbbbbbbebeeeeeeeeeebbbebbeebeebeebebbebebebbeeeeebebebbeebbbbbbbbbebbebeeeebb:    
Contact         :                                                                           b  b                     

queryA       633:SIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTELHINDNMLKFFNWTLLQQFPRLELLDLRGNKLLFLTDSLSDFTSSLRTLLLSHNRISHLPSGFL: 732
                :***********************************************************************************************     :
6kya_B_1     611:SIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTELHINDNMLKFFNWTLLQQFPRLELLDLRGNKLLFLTDSLSDFTSSLRTLLLSHNRISHLXXXXX: 710
SecStr          :TTTTEETT  EEE  SS  S   HHHHHTS TT SEEE  SS  S   GGGGGG TT  EEE  SS      S HHHH S   EEE  SS     -----:    
ExpBur          :ebbebbeebeebbbbebebeebbeebbeebbebbbebbbbebebeebebebbeebeebebbbbebbebeeeeeeeeebbebbebbbbbebebeee-----:    
Contact         :       b                                                                                            

queryA       733:SEVSSLKHLDLSSNLLKTINKSALETKTTTKLSMLELHGNPFECTCDIGDFRRWMDEHLNVKIPRLVDVICASPGDQRGKSIVSLE: 818
                :    *****************          *******************************************************:
6kya_B_1     711:XXXXSLKHLDLSSNLLKTINKXXXXXXXXXXLSMLELHGNPFECTCDIGDFRRWMDEHLNVKIPRLVDVICASPGDQRGKSIVSLE: 796
SecStr          :----  SEEE  SS       ----------  EEE TT  EE SGGGHHHHHHHHT TTSB TTGGG BEEESTTTTTSBTTT  :    
ExpBur          :----ebeebbbbebebeebee----------eeebbbbebebebeeebeebeeebeeeeebebeebbebebbeeeeeeeebbbebe:

Protein Model on 6kya_B_1_Q_1 (TEMPLATE: 6kya )

Input Residue Numbers for Focused Sites