Protein Model on 4qdh_B_1_P_1 (TEMPLATE: 4qdh )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:2]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)		 type description a(query A)
1 a A(TLR8_HUMAN) B 1 (B) polymer(polypeptide(L)) [393 aa] Variable lymphocyte receptor B, Toll-like receptor 9 chimera :Q4G1L2_EPTBU:TLR9_MOUSE:Q4G1L2_EPTBU
2 b P 1 (B) non-polymer(NAG) 2-acetamido-2-deoxy-beta-D-glucopyranose 672N(R) 720S 721H(S) 742D(N) 744S 745S(H) 768E(W) (identity: 28.6 %/40.1 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:4qdh_B_1 identity=40.1%
queryA       486:LDLSLNSIFFIGPNQFENLPDIACLNLSANSNAQVLSGTEFSAIPHVKYLDLTNNRLDFDNASALTELSDLEVLDLSYNSHYFRIAGVTHHLEFIQNFTN: 585
                :* ** *    * *  * **    ** ** ** **   *  *        ***  * **        **  *  *******  *      *   *      :
4qdh_B_1      64:LSLSRNNLVTIKPEMFVNLSRLQCLSLSHNSIAQAVNGSQFLPLTNLQVLDLSHNKLDLYHWKSFSELPQLQALDLSYNSQPFXXXXIGHNFSFVTHLSM: 163
SecStr          :EE  SS      GGGGTT TT  EEE  SS    B SS SSTT TT  EEE  SS  B   TTTTTT TT  EEE  S  S  ----     THHHH TT:    
ExpBur          :bbbbebebeebeeebbeebeebeebbbbebebebebebebbeebeebeebebbebebbbbeeebbebbebbeebebbebeeee----ebeebebbeebee:    

queryA       586:LKVLNLSHNNIYTLTDKYNLESKSLVELVFSGNRLDILWNDDDNRYISIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTELHINDNMLKFFNWTLLQ: 685
                :*  * * ** * *      * * *   * ****     * *    *   * **  *  **** * *         *** **  *   ** * ***** * :
4qdh_B_1     164:LQSLSLAHNDIHTRVSSH-LNSNSVRFLDFSGNGMGRMW-DEGGLYLHFFQGLSGLLKLDLSQNNLHILRPQNLDNLPKSLKLLSLRDNYLSFFNWTSLS: 261
SecStr          :  EEE TTS   SSS S - EESS  EEE TTS HHHHH-HSTTTTTTTTTEETT  EEE TTS  S   HHHHHTS TT  EEE TTS  S   GGGGG:    
ExpBur          :beebbbbebebeeebeee-bebebbeebebbebbbbebb-eeeeebeebbeebeebeebbbbebebeebeeebbebbbeebeebbbeebebeebebebbe:    
Contact         :                                                                                      b             

queryA       686:QFPRLELLDLRGNKLLFLTDSLSDFTSSLRTLLLSHNRISHLPSGFLSEVSSLKHLDLSSNLLKTINKS------------ALETK-----------TTT: 762
                :  * ** *** ** *  **         *  *  * * *      *      **   ** * ***   *            ** *              *:
4qdh_B_1     262:FLPNLEVLDLAGNQLKALTNGTLPNGTLLQKLDVSSNSIVSVVPAFFALAVELKEVNLSHNILKTVDRSWXXXXXXXLKELALDTNQLKSVPDGIFDXXT: 361
SecStr          :G TT  EEE TTS   EE SS   TT    EEE  SS   EE TTSSTT TT  EEE  SS      TT -------  EEE  SS      TTTT -- :    
ExpBur          :ebeebeebbbbebebebbeeeebbeebebeebbbbebebeebeeebbeebeebeebebbebebeebeeeb-------eeebbbbebebeebeeeebe--e:    
Contact         :                                  bb                    b bb                   b                    

queryA       763:KLSMLELHGNPFECTCDIGDF-RRWMDE: 789
                : *    ** **  * *   *   **   :
4qdh_B_1     362:SLQKIWLHTNPWDCSCPRIDYLSRWLNK: 389
SecStr          :   EEE  SS B   HHHHHHHHHHHHH:    
ExpBur          :ebeebebeebebebeeeebebbbebbee:    
Contact         :     b

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