[pdbjlvh2]Protein Model on 3w3k_B_1_P

Protein Model on 3w3k_B_1_P_1 (TEMPLATE: 3w3k )

CurrentView:HTML5 Change to:[JAVA]

DOWNLOAD:

[sequence-replaced 3D model] [for PyMOL]

[3D template]

[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]

MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(TLR8_HUMAN)	B 1 (B)	polymer(polypeptide(L)) [747 aa]	Toll-like receptor 8 :TLR8_HUMAN
2	b		P 1 (B)	non-polymer(NAG)	2-acetamido-2-deoxy-beta-D-glucopyranose	587K 608K 609S 611V 640N (identity: 100.0 %/94.8 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:3w3k_B_1 identity=94.8%

queryA        31:SRSYPCDEKKQNDSVIAECSNRRLQEVPQTVGKYVTELDLSDNFITHITNESFQGLQNLTKINLNHNPNVQHQNGNPGIQSNGLNITDGAFLNLKNLREL: 130
                :*********     ********************************************************            ******************:
3w3k_B_1       9:SRSYPCDEKXXXXXVIAECSNRRLQEVPQTVGKYVTELDLSDNFITHITNESFQGLQNLTKINLNHNPNVXXXXXXXXXXXXGLNITDGAFLNLKNLREL: 108
SecStr          :    SSEE ----- EEE TTS  SS  S   SS  EEE TTS   EE TTTT   TT  EEE TTSS  ------------  EE TTSS S S   EE:    
ExpBur          :ebeebbbee-----eebebeebebeebbeebeeebbebebbebebeebeeebbeebeebeebbbbebbee------------ebebeebbbeebeebebb:    

queryA       131:LLEDNQLPQIPSGLPESLTELSLIQNNIYNITKEGISRLINLKNLYLAWNCYFNKVCEKTNIEDGVFETLTNLELLSLSFNSLSHVPPKLPSSLRKLFLS: 230
                :****************************************************************************************************:
3w3k_B_1     109:LLEDNQLPQIPSGLPESLTELSLIQNNIYNITKEGISRLINLKNLYLAWNCYFNKVCEKTNIEDGVFETLTNLELLSLSFNSLSHVPPKLPSSLRKLFLS: 208
SecStr          :E TTS  SS  SS  TT SEEE  SS   EE HHHHTT TT  EEE  SSS TT      EE TTTGGG TT  EEE  SS  SS  SS  TT SEEE T:    
ExpBur          :bbbebebeebbeebbebbbebbbbbbebeebbeebbbebeebebbebbbbbbeeeeeeebebeebbbeebeebebbbbbbbbbeebbeebbebbeebebb:    

queryA       231:NTQIKYISEEDFKGLINLTLLDLSGNCPRCFNAPFPCVPCDGGASINIDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNMPHLKVLDLEFNYLVGEIASG: 330
                :****************************************************************************************************:
3w3k_B_1     209:NTQIKYISEEDFKGLINLTLLDLSGNCPRCFNAPFPCVPCDGGASINIDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNMPHLKVLDLEFNYLVGEIASG: 308
SecStr          :TS   EE TTTSTT TT  EEE TTSS   TT SS     GGG   EE TTTTTT TT  EEE TTS  S   GGGGTT TT  EEE  SS  HHHHHS :    
ExpBur          :bbebeebbeeebeebeebbbbbbbbbbbbbeeeebebeebeebeebebeeebbeebeebeebbbbbbbbeebeebbbeebeebebbbbbebebeebbeeb:    

queryA       331:AFLTMLPRLEILDLSFNYIKGSYPQHINISRNFSKLLSLRALHLRGYVFQELREDDFQPLMQLPNLSTINLGINFIKQIDFKLFQNFSNLEIIYLSENRI: 430
                :****************************************************************************************************:
3w3k_B_1     309:AFLTMLPRLEILDLSFNYIKGSYPQHINISRNFSKLLSLRALHLRGYVFQELREDDFQPLMQLPNLSTINLGINFIKQIDFKLFQNFSNLEIIYLSENRI: 408
SecStr          :GGGGG TT  EEE  S   TT   SS    GGGGG TT  EEE  S   SEE TGGGGGGTT TT  EEE  SS   EE TTHHHHSS  SEEE  SS  :    
ExpBur          :ebbeebeebeebbbbbbbeeeeeeeebebbeebeebeebebbbbbbbbbeebeeebbebbbebeebbbbbbbebebeebebebbeebeebebbbbbebeb:    

queryA       431:SPLVKDTRQSYANSSSFQRHIRKRRSTDFEFDPHSNFYHFTRPLIKPQCAAYGKALDLSLNSIFFIGPNQFENLPDIACLNLSANSNAQVLSGTEFSAIP: 530
                :****                        ************************************************************************:
3w3k_B_1     409:SPLVXXXXXXXXXXXXXXXXXXXXXXXXFEFDPHSNFYHFTRPLIKPQCAAYGKALDLSLNSIFFIGPNQFENLPDIACLNLSANSNAQVLSGTEFSAIP: 508
SecStr          :    ------------------------  S TTS SSS  S SS HHHHTTS EEE  SS   S  TTTTTT    SEEE  SS       S TTTTST:    
ExpBur          :eeee------------------------eebebeeebbeeeeebbeeebeeeeebbbbbebebeebbeebbeebbebbbbbbbbbebebebebebbeebe:    

queryA       531:HVKYLDLTNNRLDFDNASALTELSDLEVLDLSYNSHYFRIAGVTHHLEFIQNFTNLKVLNLSHNNIYTLTDKYNLESKSLVELVFSGNRLDILWNDDDNR: 630
                :****************************************************************************************************:
3w3k_B_1     509:HVKYLDLTNNRLDFDNASALTELSDLEVLDLSYNSHYFRIAGVTHHLEFIQNFTNLKVLNLSHNNIYTLTDKYNLESKSLVELVFSGNRLDILWNDDDNR: 608
SecStr          :T SEEE  SS      TTTTTT TT  EEE  S HHHHT TTS    GGGGG SS  EEE TT      SS     BSS  EEE  SS HHHHT TT  T:    
ExpBur          :ebebbbbbebebbbeeeebbebbeebbbbbbbebbeebeeeeeebbbbbbeebeebeebbbbebbbebbbeeeebebebbeebbbbbbbbeebbeeebee:    
Contact         :                                                        b                    bb b                   

queryA       631:YISIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTELHINDNMLKFFNWTLLQQFPRLELLDLRGNKLLFLTDSLSDFTSSLRTLLLSHNRISHLPSG: 730
                :****************************************************************************************************:
3w3k_B_1     609:YISIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTELHINDNMLKFFNWTLLQQFPRLELLDLRGNKLLFLTDSLSDFTSSLRTLLLSHNRISHLPSG: 708
SecStr          :TTTTTTTBTT  EEE TTS  S   HHHHHTS TT SEEE  SS  S   GGGGGG TT  EEE  SS      S HHHH SS  EEE  SS      TT:    
ExpBur          :bbebbebbeebeebbbbebebeebbeebbebbbebbeebbbbebebeebebebbeebeebeebbbeebebeebbeebeebbeebebbbbbebebeebbeb:    
Contact         :         b                                                                                          

queryA       731:FLSEVSSLKHLDLSSNLLKTINKSALETKTTTKLSMLELHGNPFECTCDIGDFRRWMDEHLNVKIPRLVDVICASPGDQRGKSIVSLE: 818
                :****************************************************************************************:
3w3k_B_1     709:FLSEVSSLKHLDLSSNLLKTINKSALETKTTTKLSMLELHGNPFECTCDIGDFRRWMDEHLNVKIPRLVDVICASPGDQRGKSIVSLE: 796
SecStr          : TTS TT  EEE  SS      HHHH  SS     EEE  S  EE SGGGHHHHHHHHH SSSB S GGG BEEESTTTTT BGGG  :    
ExpBur          :bbbebebbebbbbbebebeebeeebbbeeeebebeebbbbebebebeeebbebeebbeeeeebebeebbbbebeeeeeeeeebbbebe:

Protein Model on 3w3k_B_1_P_1 (TEMPLATE: 3w3k )

Input Residue Numbers for Focused Sites