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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(TLR8_HUMAN) | B 1 (B) | polymer(polypeptide(L)) [730 aa] | Toll-like receptor 8 :TLR8_HUMAN | |
2 | b | N 1 (B) | non-polymer(DY3) | 3-[5-methylsulfanyl-4-(3,4,5-trimethylphenyl)-1,2,4-triazol-3-yl]propan-1-ol | 261F 346F 348Y 349I 350K 351G 352S 378V 403I 405F (identity: 100.0 %/92.9 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:6kya_B_1 identity=92.9% |
queryA 33:SYPCDEKKQNDSVIAECSNRRLQEVPQTVGKYVTELDLSDNFITHITNESFQGLQNLTKINLNHNPNVQHQNGNPGIQSNGLNITDGAFLNLKNLRELLL: 132 :******************************************************************** *********************: 6kya_B_1 11:SYPCDEKKQNDSVIAECSNRRLQEVPQTVGKYVTELDLSDNFITHITNESFQGLQNLTKINLNHNPNVXXXXXXXXXXXNGLNITDGAFLNLKNLRELLL: 110 SecStr : SSEEEEETTEEEEE SS SS S TTEEEEE SS EE TTTTTT TT EEE TT S ----------- EE TTTTTT TT EEE : ExpBur :eebbbeeeeeeeebbebeebebeebbeebeeebbebebbebebeebeeebbeebeebeebbbbebeee-----------ebbebeebbbeebeebeebbb: queryA 133:EDNQLPQIPSGLPESLTELSLIQNNIYNITKEGISRLINLKNLYLAWNCYFNKVCEKTNIEDGVFETLTNLELLSLSFNSLSHVPPKLPSSLRKLFLSNT: 232 :****************************************************************************************************: 6kya_B_1 111:EDNQLPQIPSGLPESLTELSLIQNNIYNITKEGISRLINLKNLYLAWNCYFNKVCEKTNIEDGVFETLTNLELLSLSFNSLSHVPPKLPSSLRKLFLSNT: 210 SecStr : SS SS SS TT SEEE SS EE TTTSTT TT SEEE SSS SSSS SS EE TTTTTT TT EEE SS SS S TT SEEE SS: ExpBur :bebebeebbbebbebbeebbbbebebeebeeebbbebeebeebbbbbbbeeeeebeebebeebbbeebeebebbbbbbbbbeebbeebbebbeebebbeb: queryA 233:QIKYISEEDFKGLINLTLLDLSGNCPRCFNAPFPCVPCDGGASINIDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNMPHLKVLDLEFNYLVGEIASGAF: 332 :****************************************************************************************************: 6kya_B_1 211:QIKYISEEDFKGLINLTLLDLSGNCPRCFNAPFPCVPCDGGASINIDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNMPHLKVLDLEFNYLVGEIASGAF: 310 SecStr : EE TTTTTT TT EEE TTSS SS SS SSTT EE TTTTTT TT EEE SS S GGGGTT TT EEE SS HHHHHS GG: ExpBur :ebeebbeeebeebeebbbbbbbbbbbbbeeeeeeeeebeeeeebebeeebbeebeebeebbbbbbbbeebebbbbeebeebebbbbbebbbbebbeebeb: Contact : b queryA 333:LTMLPRLEILDLSFNYIKGSYPQHINISRNFSKLLSLRALHLRGYVFQELREDDFQPLMQLPNLSTINLGINFIKQIDFKLFQNFSNLEIIYLSENRISP: 432 :****************************************************************************************************: 6kya_B_1 311:LTMLPRLEILDLSFNYIKGSYPQHINISRNFSKLLSLRALHLRGYVFQELREDDFQPLMQLPNLSTINLGINFIKQIDFKLFQNFSNLEIIYLSENRISP: 410 SecStr :GGG TT EEE S TT SB GGGGG TT EEE TT SEE GGGGGGGGG TT EEE S SEE GGGGGG SS EEE SS : ExpBur :beebeebeebbbbbbeeeeeeeeebebbeebeebeebebbbbbbbbbbebeeebbebbbebeebbbbbbbbbebeebebebbeebeebebbbbbebebeb: Contact : b bbbbb b b b queryA 433:LVKDTRQSYANSSSFQRHIRKRRSTDFEFDPHSNFYHFTRPLIKPQCAAYGKALDLSLNSIFFIGPNQFENLPDIACLNLSANSNAQVLSGTEFSAIPHV: 532 :** ************************************************************************: 6kya_B_1 411:LVXXXXXXXXXXXXXXXXXXXXXXXXXXFDPHSNFYHFTRPLIKPQCAAYGKALDLSLNSIFFIGPNQFENLPDIACLNLSANSNAQVLSGTEFSAIPHV: 510 SecStr : -------------------------- SSS SSS S SS HHHHTTS EEE TTS SS TTSSTT SEEE SS B S TTTTSTT : ExpBur :ee--------------------------eeeeeeebbeeeebbeeebeeeeebbbbbebebeebbeebbeebbebbbbbbbebebebebebebbeebeeb: queryA 533:KYLDLTNNRLDFDNASALTELSDLEVLDLSYNSHYFRIAGVTHHLEFIQNFTNLKVLNLSHNNIYTLTDKYNLESKSLVELVFSGNRLDILWNDDDNRYI: 632 :****************************************************************************************************: 6kya_B_1 511:KYLDLTNNRLDFDNASALTELSDLEVLDLSYNSHYFRIAGVTHHLEFIQNFTNLKVLNLSHNNIYTLTDKYNLESKSLVELVFSGNRLDILWNDDDNRYI: 610 SecStr : EEE S B STTTTTT TT EEE TT TT S B GGGGG SS EEE TT BSS EESS EEE SS HHHHHT TT TTT: ExpBur :ebbbbbebbbebeeeebbebbeebbbbbbbebeeeeeeeeeebbbebbeebeebeebebbebebebbeeeeebebebbeebbbbbbbbbebbebeeeebb: queryA 633:SIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTELHINDNMLKFFNWTLLQQFPRLELLDLRGNKLLFLTDSLSDFTSSLRTLLLSHNRISHLPSGFL: 732 :*********************************************************************************************** : 6kya_B_1 611:SIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTELHINDNMLKFFNWTLLQQFPRLELLDLRGNKLLFLTDSLSDFTSSLRTLLLSHNRISHLXXXXX: 710 SecStr :TTTTEETT EEE SS S HHHHHTS TT SEEE SS S GGGGGG TT EEE SS S HHHH S EEE SS -----: ExpBur :ebbebbeebeebbbbebebeebbeebbeebbebbbebbbbebebeebebebbeebeebebbbbebbebeeeeeeeeebbebbebbbbbebebeee-----: queryA 733:SEVSSLKHLDLSSNLLKTINKSALETKTTTKLSMLELHGNPFECTCDIGDFRRWMDEHLNVKIPRLVDVICASPGDQRGKSIVSLE: 818 : ***************** *******************************************************: 6kya_B_1 711:XXXXSLKHLDLSSNLLKTINKXXXXXXXXXXLSMLELHGNPFECTCDIGDFRRWMDEHLNVKIPRLVDVICASPGDQRGKSIVSLE: 796 SecStr :---- SEEE SS ---------- EEE TT EE SGGGHHHHHHHHT TTSB TTGGG BEEESTTTTTSBTTT : ExpBur :----ebeebbbbebebeebee----------eeebbbbebebebeeebeebeeebeeeeebebeebbebebbeeeeeeeebbbebe: |