[pdbjlvh2]Protein Model on 5wyz_B_1_N

Protein Model on 5wyz_B_1_N_1 (TEMPLATE: 5wyz )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(TLR8_HUMAN)	B 1 (B)	polymer(polypeptide(L)) [745 aa]	Toll-like receptor 8 :TLR8_HUMAN
2	b		N 1 (B)	non-polymer(NAG)	2-acetamido-2-deoxy-beta-D-glucopyranose	608K 609S 611V 640N (identity: 100.0 %/94.7 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:5wyz_B_1 identity=94.7%

queryA        32:RSYPCDEKKQNDSVIAECSNRRLQEVPQTVGKYVTELDLSDNFITHITNESFQGLQNLTKINLNHNPNVQHQNGNPGIQSNGLNITDGAFLNLKNLRELL: 131
                :*********************************************************************           ********************:
5wyz_B_1      10:RSYPCDEKKQNDSVIAECSNRRLQEVPQTVGKYVTELDLSDNFITHITNESFQGLQNLTKINLNHNPNVXXXXXXXXXXXNGLNITDGAFLNLKNLRELL: 109
SecStr          :  SSSEEEEETTEEEEE  SS  SS  S S TT  EEE  SS   EE SSSS S TT  EEE  S S  -----------   EE TTTTTT TT  EEE:    
ExpBur          :eeebbbeeeeeeebbbebeebebeebbeebeeebbebebbebebeebeeebbeebeebeebbbbebeee-----------eebebeebbbeebeebeebb:    

queryA       132:LEDNQLPQIPSGLPESLTELSLIQNNIYNITKEGISRLINLKNLYLAWNCYFNKVCEKTNIEDGVFETLTNLELLSLSFNSLSHVPPKLPSSLRKLFLSN: 231
                :****************************************************************************************************:
5wyz_B_1     110:LEDNQLPQIPSGLPESLTELSLIQNNIYNITKEGISRLINLKNLYLAWNCYFNKVCEKTNIEDGVFETLTNLELLSLSFNSLSHVPPKLPSSLRKLFLSN: 209
SecStr          :  SS  SS  SS  TT SEEE  SS   EE HHHHTT TT SEEE  SSBSS SS SS EE TTTTTT TT  EEE  SB  SS  S   TT  EEE TT:    
ExpBur          :bbebebeebbeebbebbebbbbbebebeebeeebbbebeebeebbbbbbbeeeeebeebebeebbbeebeebebbbbbbbbbeebbeebbebbeebebbb:    

queryA       232:TQIKYISEEDFKGLINLTLLDLSGNCPRCFNAPFPCVPCDGGASINIDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNMPHLKVLDLEFNYLVGEIASGA: 331
                :****************************************************************************************************:
5wyz_B_1     210:TQIKYISEEDFKGLINLTLLDLSGNCPRCFNAPFPCVPCDGGASINIDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNMPHLKVLDLEFNYLVGEIASGA: 309
SecStr          :S   EE TTTTTT TT  EEE TTSS   TT SS    STTS   EE TTTTTT TT  EEE TTS  S   GGGGTT TT  EEE  SS  HHHHHS G:    
ExpBur          :bebeebbeebbeebeebbbbbbbbbbbbbeeeeeeeeebeeeeebebeeebbeebeebeebbbbbbbbeebebbbbeebeebebbbbbebebeebbeebe:    

queryA       332:FLTMLPRLEILDLSFNYIKGSYPQHINISRNFSKLLSLRALHLRGYVFQELREDDFQPLMQLPNLSTINLGINFIKQIDFKLFQNFSNLEIIYLSENRIS: 431
                :****************************************************************************************************:
5wyz_B_1     310:FLTMLPRLEILDLSFNYIKGSYPQHINISRNFSKLLSLRALHLRGYVFQELREDDFQPLMQLPNLSTINLGINFIKQIDFKLFQNFSNLEIIYLSENRIS: 409
SecStr          :GGGG TT  EEE  S   TT   SB    GGGGG TT  EEE TT   SEE GGGGGGGTT TT  EEE TT    EE GGGGGG SS  EEE TT    :    
ExpBur          :bbeebeebeebbbbbbeeeeeeeeebebbeebeebeebebbbbbbbbbbebeeebbebbbebeebbbbbbbbbebeebebebbeebeebebbbbbebebe:    

queryA       432:PLVKDTRQSYANSSSFQRHIRKRRSTDFEFDPHSNFYHFTRPLIKPQCAAYGKALDLSLNSIFFIGPNQFENLPDIACLNLSANSNAQVLSGTEFSAIPH: 531
                :******                       ***********************************************************************:
5wyz_B_1     410:PLVKDTXXXXXXXXXXXXXXXXXXXXXXXFDPHSNFYHFTRPLIKPQCAAYGKALDLSLNSIFFIGPNQFENLPDIACLNLSANSNAQVLSGTEFSAIPH: 509
SecStr          :   S  -----------------------  TTS SSS  S SS HHHHTTS EEE TTS  SS  TTTTTT    SEEE  SS    B  S TTTTSTT:    
ExpBur          :beeeee-----------------------eeeeeeebbeeeeebeeebeeeeebbbbbebebeebbebbbeebbebbbbbbbebebebebebebbeebee:    

queryA       532:VKYLDLTNNRLDFDNASALTELSDLEVLDLSYNSHYFRIAGVTHHLEFIQNFTNLKVLNLSHNNIYTLTDKYNLESKSLVELVFSGNRLDILWNDDDNRY: 631
                :****************************************************************************************************:
5wyz_B_1     510:VKYLDLTNNRLDFDNASALTELSDLEVLDLSYNSHYFRIAGVTHHLEFIQNFTNLKVLNLSHNNIYTLTDKYNLESKSLVELVFSGNRLDILWNDDDNRY: 609
SecStr          :  EEE  SS  B  STTTTTT TT  EEE TT   TT  TT  B  GGGGG SS  EEE TT     BSS     BSS  EEE TTS HHHHTT TT TT:    
ExpBur          :bebbbbbebebebeeeebbbbbeebbbbbbbebbeeeeeeeeebbbebbeebeebeebbbbebebebbeebeebebebbeebbbbbbebbebbebeeeeb:    
Contact         :                                                                            bb b                    

queryA       632:ISIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTELHINDNMLKFFNWTLLQQFPRLELLDLRGNKLLFLTDSLSDFTSSLRTLLLSHNRISHLPSGF: 731
                :****************************************************************************************************:
5wyz_B_1     610:ISIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTELHINDNMLKFFNWTLLQQFPRLELLDLRGNKLLFLTDSLSDFTSSLRTLLLSHNRISHLPSGF: 709
SecStr          :TTTTTTBTT  EEE TTS  S   HHHHHTS TT SEEE  SS  S   GGGGGG TT  EEE  SS      S GGGT S   EEE  SS      TTS:    
ExpBur          :bebbebbeebeebbbbebebeebbeebbeebbeebbebbbbebebeebebebbeebeebebbbbeebebeebbeebeebbebbeebbbbebebeebbeeb:    
Contact         :        b                                                                                           

queryA       732:LSEVSSLKHLDLSSNLLKTINKSALETKTTTKLSMLELHGNPFECTCDIGDFRRWMDEHLNVKIPRLVDVICASPGDQRGKSIVSLE: 818
                :**********************        *********************************************************:
5wyz_B_1     710:LSEVSSLKHLDLSSNLLKTINKXXXXXXXXTKLSMLELHGNPFECTCDIGDFRRWMDEHLNVKIPRLVDVICASPGDQRGKSIVSLE: 796
SecStr          :SSS TT  EEE  SS       --------    EEE TT  EE SGGGHHHHHHHHT TTSB   GGG BEEESTTTTTSBTTS  :    
ExpBur          :eeebebbeebbbbebebeebee--------eebeebbbbebebebeeebeebeeebeeeeebebeebbebebeeeeeeeeebbeebe:

Protein Model on 5wyz_B_1_N_1 (TEMPLATE: 5wyz )

Input Residue Numbers for Focused Sites