Protein Model on 8suf_B_1_L_1
(TEMPLATE: 
8suf
)Protein Model on 8suf_B_1_L_1
(TEMPLATE: 8suf
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ALL MOLECULES IN THE BIOLOGICAL UNIT: |
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(TLR8_HUMAN) | B 1 (B) | polymer(polypeptide(L)) [935 aa] | TIR domain-containing protein :Q9N5Z3_CAEEL | |
| 2 | b | L 1 (L) | branched(oligosaccharide) | alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | 293N 295S 317D 319E(S) 343D(S) (identity: 60.0 %/26.5 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:8suf_B_1 identity=26.5% |
queryA 285:NLTQLRYLNLSSTSLRKINAAWFKNMPHLKVLDLEFNYLVGEIASGAFLTMLPRLEILDLSFNYIK-------GSYPQHINISRN-FSKLLSLRA----L: 372
: * * ** ** * * ** * * ** * * * * * * ** :
8suf_B_1 175:SLPHLQVLNISSNELPSLRREESCVAQQLLIVDLSRNRLTN---IEQFLRGIPAIRQISVAYNSIAELDLSLATPFLQQLDAEANRIVDLTSLPGTVVHV: 271
SecStr :H TT EEE S S TT SS EEE SS S --- HHHHTT EEE SS B TTT TT EEE SS B TT EE:
ExpBur :bbeebebbbbbebebeeeebeeebebeebeebbbeebebee---beebbeebeebeebbbbebebeebebeebbeebeebebebbebeebeebbeebeeb:
Contact : b b b b b
queryA 373:HLRGYVFQELREDDFQPLMQLPNLSTINLGINFIKQIDFKLFQNFSNLEIIYLSENRISPLVKDTRQSYANSSSFQRHIRKRRSTDFEFDPHSNFYHFTR: 472
: * * * * * * * * ** * * * * * * * :
8suf_B_1 272:NLAGNALKRVPD----AVAELASLVALNVSRNEIEAGNSSVFSS-PELEMLDASYNKLDSLPVEWLQKC-----------EKRIAHLHLE-HNSIEQLTG: 354
SecStr :E TTS S H----HHHT SS EEE SS SSS -S EEE SS SS HHHHTS -----------TTT EEE -SS T:
ExpBur :ebbebebeebbe----bbbebeebebbbbbebebebeeeeebeb-eebeebbbbebebeebbeebbeeb-----------eeebbebbbb-ebebeebee:
queryA 473:PLIKPQCAAYGKALDLSLNSIFFIGPNQFENLPDIACLNLSANSNAQVLSGTEFSAIPHVKYLDLTNNRLDFDNASALTELSDLEVLDLSYNSHYFRIAG: 572
: * **** * * * ** ** * * *** * * * * *** * *** :
8suf_B_1 355:GVLAN--ATNLQTLDLSSNQLRVFRDEVLPENSKIGNLRLSNNS-LELLEPSSLSGL-KLESLDLSHNKLT-EVPAAIGKVEQLKKVDLSHN----RIAK: 445
SecStr :TSSTT-- SS EEE SS EE SSSS TT EEE SS - EE TTTTTT - SEEE S -S GGGTT SS BEE TT ---- :
ExpBur :ebbee--beebebbbbbbbebeebeeebbeeebebeebebbebe-beebeeebbeeb-ebebbbbbebebe-ebbebbeebeebeebebbeb----ebee:
queryA 573:VTHHLEFIQNFTNLKVLNLSHNNIYTLTDKYNLESKSLVELVFSGNRLDILWNDDDNRYISIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTELHIN: 672
:* * ** * * * * * * * * * * * * * * * :
8suf_B_1 446:VYQYV--LNKIKQLHTVDLSNNQLQSIGPYIFSDSSELHSLDVSNNEISLLFKD-------AFARCPKLRKISMKMNKIKSL--DEGLTEASGLRRLDVS: 534
SecStr : SST--TTS SS EEE TT B TTSSSS TT EEE SS B TT-------SS S TT EEE SS S --TTTSSS TT EEE :
ExpBur :beeee--bbebeebeebbbbebebeebeeebbbebeebebbebbebebeebeee-------bbeebeebeebbbeebebeeb--eebbeebeebeebbbb:
queryA 673:DNMLKFFNWTLLQQFPRLELLDLRGNKLLFLTD-SLSDFTS----------------------SLRTLLLSHNRISHLPSGFLSEVSSLKHLDLSSNLLK: 749
: * * * ** * * ** * * * ** * * ** * * * * * * *** :
8suf_B_1 535:HNEILVLKWSALPE--NLEILNADNNDINLLTAASMSPSTANLKSVSLSNNGITIMNADQIPNSLESLDVSNNRLAKLGKTALAAKSQLRRLNLKGNLLT: 632
SecStr :SS SEE GGGS S--S EEE TT EE SSS STTTT EEE SS STTS TT SEEE SS TTTTTS TT EEE TT S:
ExpBur :ebebeebebebbbe--ebeebebbebebeebeebeebebbeebeebbbbebebeebeeebbbebbeebbbbebebeebbeebbbebeebeebbbeebebe:
queryA 750:TINKSALETKTTTKLSMLELHGNPFECTCDIGDFRRWM: 787
: * ** * * * **:
8suf_B_1 633:VVATESMKVVEAVHPLKVEISENPLICDCQMG----WM: 666
SecStr : GGGS TT SS EEE S B GGGG----GG:
ExpBur :ebbbebbebeeeeeebebebbebebebeeebe----bb:
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[assembly_id:2]
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