Protein Model on 6wml_B_1_I_1
(TEMPLATE: 
6wml
)Protein Model on 6wml_B_1_I_1
(TEMPLATE: 6wml
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ALL MOLECULES IN THE BIOLOGICAL UNIT: |
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(TLR8_HUMAN) | B 1 (B) | polymer(polypeptide(L)) [751 aa] | Toll-like receptor 8 :TLR8_HUMAN | |
| 2 | b | I 1 (I) | branched(oligosaccharide) | beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | 475I 476K 479C 489S 490L 511N 534Y 536D (identity: 100.0 %/95.3 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:6wml_B_1 identity=95.3% |
queryA 31:SRSYPCDEKKQNDSVIAECSNRRLQEVPQTVGKYVTELDLSDNFITHITNESFQGLQNLTKINLNHNPNVQHQNGNPGIQSNGLNITDGAFLNLKNLREL: 130
:********************************************************************** ******************:
6wml_B_1 9:SRSYPCDEKKQNDSVIAECSNRRLQEVPQTVGKYVTELDLSDNFITHITNESFQGLQNLTKINLNHNPNVXXXXXXXXXXXXGLNITDGAFLNLKNLREL: 108
SecStr : SSEEEESSS EEEE SS SS S S TT SEEE TTS EE TTTTSS S EEE S S ------------ EE TTSSTT S EE:
ExpBur :eeeebbeeeeeeeeebbebeebebeebbeebbeebbebebbebebeebeeebbeebeebeebbbbebeee------------ebebeebbbeebeebeeb:
queryA 131:LLEDNQLPQIPSGLPESLTELSLIQNNIYNITKEGISRLINLKNLYLAWNCYFNKVCEKTNIEDGVFETLTNLELLSLSFNSLSHVPPKLPSSLRKLFLS: 230
:****************************************************************************************************:
6wml_B_1 109:LLEDNQLPQIPSGLPESLTELSLIQNNIYNITKEGISRLINLKNLYLAWNCYFNKVCEKTNIEDGVFETLTNLELLSLSFNSLSHVPPKLPSSLRKLFLS: 208
SecStr :E SS SS S TT SEEE SS EE HHHHTT TT EEE SSS TT EE TTSGGG TT EEE SS SS SS TT EEE T:
ExpBur :bbbebebeebbeebbebbbbbbbbbbebbebbbebbeebeebeebebbbbbbeeeebeebebeebbbeebeebebbbbbbbbbeebbeebbeebeebebb:
queryA 231:NTQIKYISEEDFKGLINLTLLDLSGNCPRCFNAPFPCVPCDGGASINIDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNMPHLKVLDLEFNYLVGEIASG: 330
:****************************************************************************************************:
6wml_B_1 209:NTQIKYISEEDFKGLINLTLLDLSGNCPRCFNAPFPCVPCDGGASINIDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNMPHLKVLDLEFNYLVGEIASG: 308
SecStr :TS EE STTSTT TT EEE TTSS TT SS TTT EE TTTTTT TT EEE TTS S GGGGTT TT EEE SS HHHHHS :
ExpBur :bbebeebebebbeebeebebbbbbbbbbbbeeeebebeebeeeeebebeeebbeebeebeebbbbbbbbeebebbbbeebeebbbbbbbebebbebbeeb:
queryA 331:AFLTMLPRLEILDLSFNYIKGSYPQHINISRNFSKLLSLRALHLRGYVFQELREDDFQPLMQLPNLSTINLGINFIKQIDFKLFQNFSNLEIIYLSENRI: 430
:****************************************************************************************************:
6wml_B_1 309:AFLTMLPRLEILDLSFNYIKGSYPQHINISRNFSKLLSLRALHLRGYVFQELREDDFQPLMQLPNLSTINLGINFIKQIDFKLFQNFSNLEIIYLSENRI: 408
SecStr :SGGGS TT EEE S TT SB GGGGG TT EEE TT SEE GGGGGGGTT TT EEE SS EE GGGGGGSS EEE SS :
ExpBur :ebbeebeebeebbbbbbbeeeeeeeebebbeebeebeebebbbbbbbbbbebeeebbebbbebeebebbbbbebebeebebebbeebeebebbbbbebeb:
queryA 431:SPLVKDTRQSYANSSSFQRHIRKRRSTDFEFDPHSNFYHFTRPLIKPQCAAYGKALDLSLNSIFFIGPNQFENLPDIACLNLSANSNAQVLSGTEFSAIP: 530
:*** ************************************************************************:
6wml_B_1 409:SPLXXXXXXXXXXXXXXXXXXXXXXXXXFEFDPHSNFYHFTRPLIKPQCAAYGKALDLSLNSIFFIGPNQFENLPDIACLNLSANSNAQVLSGTEFSAIP: 508
SecStr : ------------------------- S TTS SSS S SS HHHHTTSEEEE SS S TTTTTT EEEEE SS S TTTTST:
ExpBur :ebe-------------------------eebebeeebbeeeeeebeeebeeeeebbbbbebebeebbeebbeebbebbbbbbbebebebebebebbeebe:
Contact : bb b bb b
queryA 531:HVKYLDLTNNRLDFDNASALTELSDLEVLDLSYNSHYFRIAGVTHHLEFIQNFTNLKVLNLSHNNIYTLTDKYNLESKSLVELVFSGNRLDILWNDDDNR: 630
:****************************************************************************************************:
6wml_B_1 509:HVKYLDLTNNRLDFDNASALTELSDLEVLDLSYNSHYFRIAGVTHHLEFIQNFTNLKVLNLSHNNIYTLTDKYNLESKSLVELVFSGNRLDILWNDDDNR: 608
SecStr :T SEEE SS TTTTTT TT EEE S HHHHT TTS GGGGG SS EEE TT SS BSS EEE TTS HHHHT TT T:
ExpBur :ebebbbbbebebbbeeeebbebbeebbbbbbbebbeebeeeeeebbbbbbeebeebeebbbbebebebbbeeeebebebbeebbbbbbbbeebbeeeeee:
Contact : b b
queryA 631:YISIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTELHINDNMLKFFNWTLLQQFPRLELLDLRGNKLLFLTDSLSDFTSSLRTLLLSHNRISHLPSG: 730
:****************************************************************************************************:
6wml_B_1 609:YISIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTELHINDNMLKFFNWTLLQQFPRLELLDLRGNKLLFLTDSLSDFTSSLRTLLLSHNRISHLPSG: 708
SecStr :TTTTTTTBTT EEE SS S HHHHHTS TT SEEE SS S GGGGGG TT EEE SS S STTT S EEE SS SS:
ExpBur :bbebbeebeebeebbbbebebeebbeebbebbbebbeebbbbebebeebebebbeebeebeebbbeebebeebbeebeebbebbebbbbbebebeebbeb:
queryA 731:FLSEVSSLKHLDLSSNLLKTINKSALETKTTTKLSMLELHGNPFECTCDIGDFRRWMDEHLNVKIPRLVDVICASPGDQRGKSIVSLE: 818
:****************************************************************************************:
6wml_B_1 709:FLSEVSSLKHLDLSSNLLKTINKSALETKTTTKLSMLELHGNPFECTCDIGDFRRWMDEHLNVKIPRLVDVICASPGDQRGKSIVSLE: 796
SecStr : SSS S EEE SS GGGG S EEE TT EE SSSHHHHHHHHHT TTSB GGGSEEEESTTSTTEETTS :
ExpBur :bbbebebbeebbbbebebeebeeebbeeeeeeebeebbbbebebebeeebbbbeebbeeeeebebeebbbbebeeeeebeeebbeebe:
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[assembly_id:1]
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