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ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(TLR8_HUMAN) | B 1 (B) | polymer(polypeptide(L)) [601 aa] | Toll-like receptor 4 :TLR4_HUMAN | |
2 | b | H 1 (H) | branched(oligosaccharide) | L-glycero-alpha-D-manno-heptopyranose-(1-7)-L-glycero-alpha-D-manno-heptopyranose-(1-3)-L-glycero-alpha-D-manno-heptopyranose-(1-5)-[3-deoxy-alpha-D-manno-oct-2-ulopyranosonic acid-(2-4)]3-deoxy-alpha-D-manno-oct-2-ulopyranosonic acid-(2-6)-2-amino-2-deoxy-beta-D-glucopyranose-(1-6)-2-amino-2-deoxy-alpha-D-glucopyranose | 487D 489S(Y) 525E(K) (identity: 33.3 %/31.3 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:3fxi_B_1 identity=31.3% |
queryA 216:VPPKLPSSLRKLFLSNTQIKYISEEDFKGLINLTLLDLSGNCPRCFNAPFPCVPCDGGASINIDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNMPHL-K: 314 : * ** * * ** * * **** ** * * * * * * * * * *: 3fxi_B_1 22:IPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLS----RC-------------EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQK: 104 SecStr : SS SS EEE S B TT S TT EEE T----T ------------- EE TTSSTT SS EEE TT EE TTTTTT TT E: ExpBur :ebeebeeebeebbbbebbbeebbeebbebbeebeebebb----eb-------------ebeebeebbbeebeebebbbbebbebeeebebbbeebeebee: queryA 315:VLDLEFNYLVGEIASGAFLTMLPRLEILDLSFNYIKGSYPQHINISRNFSKLLSLRALHLRGYVFQELREDDFQPLMQLPNLSTINLG----INFIKQID: 410 : * * * * * * * * * ** * * * * * * * * * * *** : 3fxi_B_1 105:LVAVETNLASLENFP---IGHLKTLKELNVAHNLI-----QSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGA: 196 SecStr :EE TTS STT T---TTT TT EEE SS ----- GGGGT TT EEE SS EE GGGGTTGGG SS EEE TT EE TTT: ExpBur :bbbbebebeebeebb---bbebeebeebebbebeb-----eebebbebbeebeebeebebbebebebbeeebbebbeebeebebbbebbebebeebeeeb: queryA 411:FK--------LFQNFSNLEIIYLSENRISPLVKDTRQSYANSSSFQRHIRKRRSTDFEFDPHSNFYHFTRPLIKPQC--------AAYGKALDLSLNSIF: 494 :** * ** * * * * * ** * * * ** ** * * : 3fxi_B_1 197:FKEIRLHKLTLRNNFDSLNVM-----------KTCIQGLAG-------LEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAY---LDYYLDDII: 275 SecStr :TTT EEEEEEEES SSHHHH-----------HHHHHHTTT------- EEEEEEEE TTS S TTTTGGGGGSEEEEEEEEE---ESS ST: ExpBur :beebebeebbbebbbeebeeb-----------eebbebbee-------bebebbbbbbeeeeeebeebeebbbeebeebebeebebbb---beeebeebb: Contact : b b queryA 495:FIGPNQFENLPDIACLNLSANSNAQV-------------LSGTEFSAIPHVKYLDLTNNRLDF-----DNASALTELSDLEVLDLSYNSHYFRIAGVTHH: 576 : * * * * * * * * * ** * ** * ** **** * * * : 3fxi_B_1 276:----DLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSL--KRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFK--GCCSQ: 367 SecStr :----TTSGGGSS SEEEEEEE TT SEEEEES B SS SS -- EEEEES BS SB TT EEE SS BEE--EEEET: ExpBur :----ebbebbbebbbbbbbbbbbeebeebeeebebeebebbebebeebbebebeeb--eebbbbebeeeeebeebebeebebbbbbebebebe--ebbbe: Contact : b b queryA 577:LEFIQNFTNLKVLNLSHNNIYTLTDKYNLESKSLVELVFSGNRLDILWNDDDNRYISIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTELHINDNML: 676 : * * ** * ** * * * * * * * * * * ** ** * * * * ** * * : 3fxi_B_1 368:SDF--GTTSLKYLDLSFNGVITMSSNF-LGLEQLEHLDFQHSNLKQMSE------FSVFLSLRNLIYLDISHTHTRVAFNGIFNGL-SSLEVLKMAGNSF: 457 SecStr :TTT--T S EEE S SEEEEEEEE-ET TT EEE TTSEEESTBT------TBTTTT TT EEE TTS B TTTTTT -SS B TT B: ExpBur :ebb--ebeebeebbbbebeebebeeeb-ebbeebeebbbeebebeebee------ebbbebbeebeebbbbebebebeeebbbebb-eebebbebbebbb: queryA 677:KF-FNWTLLQQFPRLELLDLRGNKLLFLTDSLSDFTSSLRTLLLSHNRISHLPSGFLSEVSSLKHLDLSSNLLKTINKSALETKTTTKLSMLELHGNPFE: 775 : * * *** * * *** * *** * ** ** * * * * * * * * * * : 3fxi_B_1 458:QENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQ-HFPSSLAFLNLTQNDFA: 556 SecStr :GGG S TT S B TTS S TTSGGG SS B TTS SS SGGGG TT SS S TT- TT S : ExpBur :eeeebbebbeebeebeebbbbebebeeebeebbebbeebeebebbebebebbebebbeebeebeebebbebebbebeeeebe-ebbeebeebbbbebebb: queryA 776:CTCDIGDFRRWMDE--HLNVKIPRLVDVICASPGDQRGKSIVSLELT: 820 :*** * * * * * ** * * * ** *: 3fxi_B_1 557:CTCEHQSFLQWIKDQRQLLVEVERME---CATPSDKQGMPVLSLNIT: 600 SecStr : SGGGHHHHHHHHHTTTT GGG B--- S SSS SSBTTS : ExpBur :beeeeeebbebbbeeeeebeeeeebe---beebeeeeeeebbebeee: |