Protein Model on 6v9u_B_1_G_1
(TEMPLATE: 
6v9u
)Protein Model on 6v9u_B_1_G_1
(TEMPLATE: 6v9u
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ALL MOLECULES IN THE BIOLOGICAL UNIT: |
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(TLR8_HUMAN) | B 1 (B) | polymer(polypeptide(L)) [735 aa] | Toll-like receptor 8 :TLR8_HUMAN | |
| 2 | b | G 1 (G) | branched(oligosaccharide) | beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | 426S 475I 476K 479C 489S 490L 511N 513S 536D (identity: 100.0 %/93.5 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:6v9u_B_1 identity=93.5% |
queryA 33:SYPCDEKKQNDSVIAECSNRRLQEVPQTVGKYVTELDLSDNFITHITNESFQGLQNLTKINLNHNPNVQHQNGNPGIQSNGLNITDGAFLNLKNLRELLL: 132
:******* ******************************************************* ********************:
6v9u_B_1 11:SYPCDEKXXXXXVIAECSNRRLQEVPQTVGKYVTELDLSDNFITHITNESFQGLQNLTKINLNHNPNXXXXXXXXXXXXXGLNITDGAFLNLKNLRELLL: 110
SecStr : SSEE ----- EEE SS SS S S TT EEE S EE TTTTTT TT EEE SS ------------- EE TTSSTT SS EEE :
ExpBur :eebbeee-----eebebeebebeebbeebeeebebbebbebebeebeeeebeebeebebbbbbebee-------------ebebeeebbeebeebbbbeb:
queryA 133:EDNQLPQIPSGLPESLTELSLIQNNIYNITKEGISRLINLKNLYLAWNCYFNKVCEKTNIEDGVFETLTNLELLSLSFNSLSHVPPKLPSSLRKLFLSNT: 232
:**************************************************** **********************************************:
6v9u_B_1 111:EDNQLPQIPSGLPESLTELSLIQNNIYNITKEGISRLINLKNLYLAWNCYFNXXCEKTNIEDGVFETLTNLELLSLSFNSLSHVPPKLPSSLRKLFLSNT: 210
SecStr : SS SS SS TT SEEE SS EE TTTTTT S SEEE SSSS -- S EE TTTTTS TT EEE SS SS SS TT EEE TT :
ExpBur :bebebeebbeebbeebebbbbbebebeebeeebbbebeebeebebbbbbbee--eeebeebebbbeebeebebbbbbbbbbeebbeebbeebbebebbbb:
queryA 233:QIKYISEEDFKGLINLTLLDLSGNCPRCFNAPFPCVPCDGGASINIDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNMPHLKVLDLEFNYLVGEIASGAF: 332
:****************************************************************************************************:
6v9u_B_1 211:QIKYISEEDFKGLINLTLLDLSGNCPRCFNAPFPCVPCDGGASINIDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNMPHLKVLDLEFNYLVGEIASGAF: 310
SecStr : EE TTTTSS TT SEEE TTSS S SS TTS EE TTTTTT TT EEE SS S GGGGTT SS EEE SS HHHHHS GG:
ExpBur :ebbebebebbeebeebebbbbbbbbbbeeeeebeeeeeeeeeebebebebbeebeebeebbbbbbbbeebeeebbeebeebbbbbbbbbebbebbeebeb:
queryA 333:LTMLPRLEILDLSFNYIKGSYPQHINISRNFSKLLSLRALHLRGYVFQELREDDFQPLMQLPNLSTINLGINFIKQIDFKLFQNFSNLEIIYLSENRISP: 432
:****************************************************************************************************:
6v9u_B_1 311:LTMLPRLEILDLSFNYIKGSYPQHINISRNFSKLLSLRALHLRGYVFQELREDDFQPLMQLPNLSTINLGINFIKQIDFKLFQNFSNLEIIYLSENRISP: 410
SecStr :GGG SS EEE S TT SS GGGGG TT EEE TT SEE TGGGTTTTT SS EEE SS SEE GGGGGGSSS EEE SS :
ExpBur :beebeebeebbbbbbeeeeeeeeebebbeebeebeebebbbbbbbbbbebeeebbebbbebeebbbbbbbebebeebebebbeebeebebbbbbebebeb:
Contact : b
queryA 433:LVKDTRQSYANSSSFQRHIRKRRSTDFEFDPHSNFYHFTRPLIKPQCAAYGKALDLSLNSIFFIGPNQFENLPDIACLNLSANSNAQVLSGTEFSAIPHV: 532
:** ************************************************************************:
6v9u_B_1 411:LVXXXXXXXXXXXXXXXXXXXXXXXXXXFDPHSNFYHFTRPLIKPQCAAYGKALDLSLNSIFFIGPNQFENLPDIACLNLSANSNAQVLSGTEFSAIPHV: 510
SecStr : -------------------------- SSS SSS S SS HHHHTSSEEEE SSS SS TTTTTT EEEEE TTS B S TTSSSTT :
ExpBur :ee--------------------------eeeeeeebbeeeeebeeebeeeeebbbbbebebeebbeebbeebbebbbbbbbebebebebeeebbeebeeb:
Contact : bb b bb b b
queryA 533:KYLDLTNNRLDFDNASALTELSDLEVLDLSYNSHYFRIAGVTHHLEFIQNFTNLKVLNLSHNNIYTLTDKYNLESKSLVELVFSGNRLDILWNDDDNRYI: 632
:****************************************************************************************************:
6v9u_B_1 511:KYLDLTNNRLDFDNASALTELSDLEVLDLSYNSHYFRIAGVTHHLEFIQNFTNLKVLNLSHNNIYTLTDKYNLESKSLVELVFSGNRLDILWNDDDNRYI: 610
SecStr :SEEE SS B STTTTTT TT EEE TT HHHHHSSSS TTGGG SS EEE TT SS S EESS EEE TTS HHHHTT TT ST:
ExpBur :bbbbbbebebbbbeeebbbbbeebebbbbbebeebbeeeeeebbbebbeebeebbebebbebebeebbeeeebebebbeebbbbbbebeebbebeeeebe:
Contact : b
queryA 633:SIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTELHINDNMLKFFNWTLLQQFPRLELLDLRGNKLLFLTDSLSDFTSSLRTLLLSHNRISHLPSGFL: 732
:****************************************************************************************************:
6v9u_B_1 611:SIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTELHINDNMLKFFNWTLLQQFPRLELLDLRGNKLLFLTDSLSDFTSSLRTLLLSHNRISHLPSGFL: 710
SecStr :TTTTEETT EEE TTS S HHHHHTS TT SEEE SS GGGGGG SS EEE TT S GGGT SS EEE TTS TTST:
ExpBur :ebbebbeebeebbbbebebeebeeebbeebbebbbebbbbebebbebebebbeebeebebbbbeebebeebbeebeeebeebbebbbbebebeebbeebb:
queryA 733:SEVSSLKHLDLSSNLLKTINKSALETKTTTKLSMLELHGNPFECTCDIGDFRRWMDEHLNVKIPRLVDVICASPGDQRGKSIVSLE: 818
:************************ *********************************************************:
6v9u_B_1 711:SEVSSLKHLDLSSNLLKTINKSALXXXXXTKLSMLELHGNPFECTCDIGDFRRWMDEHLNVKIPRLVDVICASPGDQRGKSIVSLE: 796
SecStr :TT SS EEE TTS TTT ----- EEE TT EE SSTTHHHHHHHHH SSB S GGG BEEESTTTTTSBSSS :
ExpBur :eebeebebbbbbebebeebeeebb-----eebeebbbbebebbbeeebeebeebbeebeebebeebbbbebeeeeebbeebbeeee:
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[assembly_id:1]
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