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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(TLR8_HUMAN) | B 1 (B) | polymer(polypeptide(L)) [739 aa] | Toll-like receptor 8 :TLR8_HUMAN | |
2 | b | G 1 (G) | branched(oligosaccharide) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | 475I 476K 479C 487D 489S 511N 513S 534Y 536D (identity: 100.0 %/93.8 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:5wyx_B_1 identity=93.8% |
queryA 32:RSYPCDEKKQNDSVIAECSNRRLQEVPQTVGKYVTELDLSDNFITHITNESFQGLQNLTKINLNHNPNVQHQNGNPGIQSNGLNITDGAFLNLKNLRELL: 131 :******************************************************************** ********************: 5wyx_B_1 10:RSYPCDEKKQNDSVIAECSNRRLQEVPQTVGKYVTELDLSDNFITHITNESFQGLQNLTKINLNHNPNXXXXXXXXXXXXNGLNITDGAFLNLKNLRELL: 109 SecStr : SSSEEEEETTEEEEE SS SS SS SS EEE SS EE TTTS S TT EEE TT ------------ EE TTTTTT TT EEE: ExpBur :eeebbbeeeeeeeebbebeebebeebbeebbeebbebebbebebeebeeebbeebeebeebbbbebee------------ebbebeebbbeebeebeebb: queryA 132:LEDNQLPQIPSGLPESLTELSLIQNNIYNITKEGISRLINLKNLYLAWNCYFNKVCEKTNIEDGVFETLTNLELLSLSFNSLSHVPPKLPSSLRKLFLSN: 231 :****************************************************************************************************: 5wyx_B_1 110:LEDNQLPQIPSGLPESLTELSLIQNNIYNITKEGISRLINLKNLYLAWNCYFNKVCEKTNIEDGVFETLTNLELLSLSFNSLSHVPPKLPSSLRKLFLSN: 209 SecStr : SS SS SS TT SEEE SS EE HHHHTT TT SEEE SSBSS SS SS EE TTTTTT TT EEE SB SS S TT EEE TT: ExpBur :bbebebeebbbebbebbeebbbbebebeebeeebbbebeebeebbbbbbbeeeeebeebeeeebbbeebeebebbbbbbbbbeebbeebbebbeebebbb: queryA 232:TQIKYISEEDFKGLINLTLLDLSGNCPRCFNAPFPCVPCDGGASINIDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNMPHLKVLDLEFNYLVGEIASGA: 331 :****************************************************************************************************: 5wyx_B_1 210:TQIKYISEEDFKGLINLTLLDLSGNCPRCFNAPFPCVPCDGGASINIDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNMPHLKVLDLEFNYLVGEIASGA: 309 SecStr :S EE TTTTTT TT EEE TTSS TT SS GGG EE TTTTTT TT EEE TTS S GGGGTT TT EEE SS HHHHHS G: ExpBur :bebeebbeebbeebeebbbbbbbbbbbbeeeeeeeeeebeeeeebebeeebbeebeebeebbbbbbbbeebeeebbeebeebebbbbbebebeebbeebe: queryA 332:FLTMLPRLEILDLSFNYIKGSYPQHINISRNFSKLLSLRALHLRGYVFQELREDDFQPLMQLPNLSTINLGINFIKQIDFKLFQNFSNLEIIYLSENRIS: 431 :****************************************************************************************************: 5wyx_B_1 310:FLTMLPRLEILDLSFNYIKGSYPQHINISRNFSKLLSLRALHLRGYVFQELREDDFQPLMQLPNLSTINLGINFIKQIDFKLFQNFSNLEIIYLSENRIS: 409 SecStr :GGGG TT EEE TT TT SS GGGGG TT EEE TT SEE GGGGGGGTT TT EEE TT EE GGGGGS SS EEE TTS : ExpBur :bbeebeebeebbbbbbeeeeeeeeebebbebbbebeebebbbbebbbbbebeeebbebbbebeebbbbbbbbbebeebebebbeebeebebbbbbebebe: queryA 432:PLVKDTRQSYANSSSFQRHIRKRRSTDFEFDPHSNFYHFTRPLIKPQCAAYGKALDLSLNSIFFIGPNQFENLPDIACLNLSANSNAQVLSGTEFSAIPH: 531 :**** ***********************************************************************: 5wyx_B_1 410:PLVKXXXXXXXXXXXXXXXXXXXXXXXXXFDPHSNFYHFTRPLIKPQCAAYGKALDLSLNSIFFIGPNQFENLPDIACLNLSANSNAQVLSGTEFSAIPH: 509 SecStr : ------------------------- TTS SSS SS SS HHHHTTS EEE TTSS SS TTTTTT SEEE TTS B S TTTTSTT: ExpBur :beee-------------------------eeeeeeebbeeeebbeeebeeeeebbbbbebebeebbeebbeebbebbbbbbbebebebebebebbeebee: Contact : bb b b b b b queryA 532:VKYLDLTNNRLDFDNASALTELSDLEVLDLSYNSHYFRIAGVTHHLEFIQNFTNLKVLNLSHNNIYTLTDKYNLESKSLVELVFSGNRLDILWNDDDNRY: 631 :************************************ ***********************************************************: 5wyx_B_1 510:VKYLDLTNNRLDFDNASALTELSDLEVLDLSYNSHYXXXXXVTHHLEFIQNFTNLKVLNLSHNNIYTLTDKYNLESKSLVELVFSGNRLDILWNDDDNRY: 609 SecStr : EEE SS B STTTTTT TT EEE TT ----- B GGGGG SS EEE TT BSS EESS EEE TTS HHHHHT TT TT: ExpBur :bebbbbbebebebeeeebbbbbeebbbbbbbebeee-----eebbbebbeebeebeebebbebebebbeeeeebebebbeebbbbbbbbbebbebeeeeb: Contact : b b queryA 632:ISIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTELHINDNMLKFFNWTLLQQFPRLELLDLRGNKLLFLTDSLSDFTSSLRTLLLSHNRISHLPSGF: 731 :****************************************************************************************************: 5wyx_B_1 610:ISIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTELHINDNMLKFFNWTLLQQFPRLELLDLRGNKLLFLTDSLSDFTSSLRTLLLSHNRISHLPSGF: 709 SecStr :TTTTTEETT EEE SS S HHHHHTS TT SEEE SS S GGGGGG TT EEE SS S HHHH SS EEE SS TTS: ExpBur :eebbeebeebeebbbbebebeebbeebbebbbeebbebbbbebebeebebebbeebeebebbbbebbebeebbeebeebbebbeebbbbebebeebbeeb: queryA 732:LSEVSSLKHLDLSSNLLKTINKSALETKTTTKLSMLELHGNPFECTCDIGDFRRWMDEHLNVKIPRLVDVICASPGDQRGKSIVSLEL: 819 :*********************** **********************************************************: 5wyx_B_1 710:LSEVSSLKHLDLSSNLLKTINKSXXXXXXXTKLSMLELHGNPFECTCDIGDFRRWMDEHLNVKIPRLVDVICASPGDQRGKSIVSLEL: 797 SecStr :SSS S EEE TTS ------- EEE TT EE SGGGHHHHHHHHT TTS GGG BEEESTTTTTSBTTT : ExpBur :beebebbebbbbbebebeebeee-------eebeebbbbebebebeeebbebeebbeebeebebeebbebebeeeeeeeeebbbebee: |