Protein Model on 7wm4_B_1_F_1 (TEMPLATE: 7wm4 )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)		 type description a(query A)
1 a A(TLR8_HUMAN) B 1 (D) polymer(polypeptide(L)) [668 aa] Toll-like receptor 3 :TLR3_MOUSE
2 b F 1 (B) polymer(polyribonucleotide) RNA (81-MER) 405F(N) 407K(A) 432P(R) (identity: 0.0 %/35.1 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:7wm4_B_1 identity=35.1%
queryA        65:VTELDLSDNFITHITNESFQGLQNLTKINLNHNPNVQHQNGNPGIQSN-------------GLNITDGAFLNLKNLRELLLEDNQLPQIPSGLPESLTEL: 151
                : *****  * *  *    *    ** *  * **       *  * *                *      **    ** * *  * *     *       *:
7wm4_B_1     101:LTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNGLSSTKLGT-GVQLENLQELLLAKNKILALRSEELEFLGNSSLRKLDLSSNPLKEFSPGCFQTIGKL: 199
SecStr          :  EEEBSS       S TTSS SS  EEEB SS  S     S-S   SS  EEE  SS   EE TTTTTT SS EESEEE TT    EE TTTTTS SEE:    
ExpBur          :bbebbbeebebeeeeebbbeebeebeebbbbebbbeebebbe-eebbeebeebebbebebebbeeebbebbeebebeebbbbebebeebeeebbeebeeb:    

queryA       152:-SLIQNNIY---NITKEGISRLIN--LKNLYLAWNCYFNKVCEKTNIEDGVFETL--TNLELLSLSFNSLSHVP----PKLPSSLRKLFLSNTQIKYISE: 239
                :  *  **       *      * *    ** ** *                *  *  ***  * ** * *  *       ** *** * *    *   * :
7wm4_B_1     200:FALLLNNAQLNPHLTEKLCWELSNTSIQNLSLANN-------QLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLP-SLRYLSLEYNNIQRLSP: 291
SecStr          : EEE TTS   HHHHHHHHHHTTTS   EEE  SS-------   EE TTTTGGGGGS  SEEE TTS   EE TTTTTT S-S  EEE  S    EE T:    
ExpBur          :ebbbbeebebeeebbeebbebbbebebeebbbbeb-------ebeebeeebbbbbeebebeebbbbebebeebeebbbeebe-ebeebbbeebebeebbe:    

queryA       240:EDFKGLINLTLLDLSGNCPRCFNAPFPCVPCDGGASINIDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNMPHLKVLDLEFNYL----------------: 323
                :  * ** **  * *     * *               *** * ** *  * ***             *     ** * *                     :
7wm4_B_1     292:RSFYGLSNLRYLSLK----RAFTKQSVSL----ASHPNIDDFSFQWLKYLEYLNMDDNNIPSTKSNTFTGLVSLKYLSLSKTFTSLQTLTNETFVSLAHS: 383
SecStr          :TTTTT SS  EEE T----T S    SSS----    EE TTSSTT SS  EEE  S  B    TTSSTT SS  EEE TT BSS SEE TTSGGGGSS :    
ExpBur          :ebbebbeebeebbbe----ebbbeeeeee----eeebebeeebbebbeebeebbbbebbbeebeeebbeebeebeebbbbebbeebeebeeebbebbeeb:    

queryA       324:-----------VGEIASGAFLTMLPRLEILDLSFNYIKG------------------SYPQHINIS-RNFSKLLSLRALHLRGYVFQ--ELREDDFQPLM: 391
                :              ** * *   *  * ****  * *                    **      *   *    **  * **             * ** :
7wm4_B_1     384:PLLTLNLTKNHISKIANGTF-SWLGQLRILDLGLNEIEQKLSGQEWRGLRNIFEIYLSYNKYLQLSTSSFALVPSLQRLMLRRVALKNVDISPSPFRPLR: 482
SecStr          :   EEE TTS   EE TTTT-TT TT  EEE  SS  EEE  SGGGTT SS  EEE  S SEEE  TTSSSS     EEE TT        SS TTTT  :    
ExpBur          :ebeebebbebebeebeebbb-eebbebeebebbebebebebebebbeebeebebbebbebeebbbbeebbeebeebeebbbeebebeebeeeebbbeebe:    

queryA       392:QLPNLSTINLGINFIKQIDFKLFQNFSNLEIIYLSENRISPL: 433
                :   **    *  * *  *   *     ****     *    *:
7wm4_B_1     483:---NLTILDLSNNNIANINEDLLEGLENLEILDFQHNNLARL: 521
SecStr          :---   EEE  SS      TTTT S TT  EEE  S   STT:    
ExpBur          :---ebbbbbbbebebeebeeebbeebeebeebbbbebebeeb:    
Contact         :             b b                        b

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