Protein Model on 7r54_B_1_F_1 (TEMPLATE: 7r54 )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)		 type description a(query A)
1 a A(TLR8_HUMAN) B 1 (B) polymer(polypeptide(L)) [734 aa] Toll-like receptor 8 :TLR8_HUMAN
2 b F 1 (F) branched(oligosaccharide) alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose 226K 228F 230S 250L 252D 254S 291Y 293N 462D 464H 465S 466N 467F 468Y (identity: 100.0 %/93.1 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:7r54_B_1 identity=93.1%
queryA        31:SRSYPCDEKKQNDSVIAECSNRRLQEVPQTVGKYVTELDLSDNFITHITNESFQGLQNLTKINLNHNPNVQHQNGNPGIQSNGLNITDGAFLNLKNLREL: 130
                :*********************************************************************             ******************:
7r54_B_1       5:SRSYPCDEKKQNDSVIAECSNRRLQEVPQTVGKYVTELDLSDNFITHITNESFQGLQNLTKINLNHNPNXXXXXXXXXXXXXGLNITDGAFLNLKNLREL: 104
SecStr          :   SS EEEE SSSEEEE  SS  SS  S S TT SEEE  SS   EE TTTTTT TT  EEE  S   -------------  EE TTSSTT TT  EE:    
ExpBur          :ebeebbebeeeeeeebbebeebebeebbeebbeebbebebbebebeebeeebbeebeebeebbbbebee-------------ebebeebbbeebeebeeb:    

queryA       131:LLEDNQLPQIPSGLPESLTELSLIQNNIYNITKEGISRLINLKNLYLAWNCYFNKVCEKTNIEDGVFETLTNLELLSLSFNSLSHVPPKLPSSLRKLFLS: 230
                :****************************************************    ********************************************:
7r54_B_1     105:LLEDNQLPQIPSGLPESLTELSLIQNNIYNITKEGISRLINLKNLYLAWNCYXXXXCEKTNIEDGVFETLTNLELLSLSFNSLSHVPPKLPSSLRKLFLS: 204
SecStr          :E  SS  SS  SS  TT SEEE  SS   EE TTTTTT TT  EEE  SS  ----  S EE TTTTTT TT  EEE  SS  SS  SS  TT  EEE T:    
ExpBur          :bbbebebeebbeebbebbbebbbbebebeebeeebbbebeebeebebbebbe----eeebebbebbbeebeebebbbbbbbbbeebbeebbeebeebebb:    
Contact         :                                                                                               b b b

queryA       231:NTQIKYISEEDFKGLINLTLLDLSGNCPRCFNAPFPCVPCDGGASINIDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNMPHLKVLDLEFNYLVGEIASG: 330
                :****************************************************************************************************:
7r54_B_1     205:NTQIKYISEEDFKGLINLTLLDLSGNCPRCFNAPFPCVPCDGGASINIDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNMPHLKVLDLEFNYLVGEIASG: 304
SecStr          :T    EE GGGGTT TT  EEE TTSS   SS SS     SSS   EE TTTTTT TT  EEE  SS  S   GGGGTT TT  EEE  SS  HHHHHH :    
ExpBur          :bbebeebeeeebeebeebbbbbbbbbbbbeeeeebeeeebeeeeebebebebbbebeebeebbbbbbbbeebeeebbeebeebebbbbbbbebbebbeeb:    
Contact         :                   b b b                                    b b                                     

queryA       331:AFLTMLPRLEILDLSFNYIKGSYPQHINISRNFSKLLSLRALHLRGYVFQELREDDFQPLMQLPNLSTINLGINFIKQIDFKLFQNFSNLEIIYLSENRI: 430
                :****************************************************************************************************:
7r54_B_1     305:AFLTMLPRLEILDLSFNYIKGSYPQHINISRNFSKLLSLRALHLRGYVFQELREDDFQPLMQLPNLSTINLGINFIKQIDFKLFQNFSNLEIIYLSENRI: 404
SecStr          :SGGGG TT  EEE  S   TT   SS    GGGGG TT  EEE TT   SEE GGGGGGGTT SS  EEE  S   SEE GGGGTT SS  EEE  SS  :    
ExpBur          :ebbeebeebeebbbbbbeeeeeeeeebebbeebeebeebebbbbebbbbbebeeebbebbbebeebebbbbbbbebeebebebbeebeebeebbbbebeb:    

queryA       431:SPLVKDTRQSYANSSSFQRHIRKRRSTDFEFDPHSNFYHFTRPLIKPQCAAYGKALDLSLNSIFFIGPNQFENLPDIACLNLSANSNAQVLSGTEFSAIP: 530
                :***                            *********************************************************************:
7r54_B_1     405:SPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXDPHSNFYHFTRPLIKPQCAAYGKALDLSLNSIFFIGPNQFENLPDIACLNLSANSNAQVLSGTEFSAIP: 504
SecStr          :   ---------------------------- TTS SSS  S SS HHHHTTSEEEE  SSS SS  TTTTTT   EEEEE  SS    B  S TTTTST:    
ExpBur          :ebe----------------------------eeeeeebbbeeebbeeebeeeeebbbbbebebeebbeebbeebbebbbbbbbebebbbebebebbeebe:    
Contact         :                               b bbbbb                                                              

queryA       531:HVKYLDLTNNRLDFDNASALTELSDLEVLDLSYNSHYFRIAGVTHHLEFIQNFTNLKVLNLSHNNIYTLTDKYNLESKSLVELVFSGNRLDILWNDDDNR: 630
                :********************************************************************** ***********************   ***:
7r54_B_1     505:HVKYLDLTNNRLDFDNASALTELSDLEVLDLSYNSHYFRIAGVTHHLEFIQNFTNLKVLNLSHNNIYTLTXKYNLESKSLVELVFSGNRLDILWXXXDNR: 604
SecStr          :T  EEE  SS  B  STTTTTT TT  EEE TT   SS  TTTSS  GGGGG SS  EEE TT       -  S   SS  EEE TTS HHHH --- TT:    
ExpBur          :ebebbbbbebbbbbbeeebbbbbeebbbbbbbebebeeeeeeebbbbebbeebeebeebebbebebeebb-eeebebebbeebbbbebbbeebb---eee:    

queryA       631:YISIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTELHINDNMLKFFNWTLLQQFPRLELLDLRGNKLLFLTDSLSDFTSSLRTLLLSHNRISHLPSG: 730
                :****************************************************************************************************:
7r54_B_1     605:YISIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTELHINDNMLKFFNWTLLQQFPRLELLDLRGNKLLFLTDSLSDFTSSLRTLLLSHNRISHLPSG: 704
SecStr          :STTTTTT TT  EEE  SS  S   HHHHHTS TT SEEE  SS  S   GGGGGG TT  EEE  S       S HHHH SS  EEE  SS        :    
ExpBur          :bbebbebbeebeebbbbebebeebeeebbebbbebbeebbbbebebeebebebbeebeebebbbbeebebeebbeeeeebbeebebbbbbebebeeebee:    

queryA       731:FLSEVSSLKHLDLSSNLLKTINKSALETKTTTKLSMLELHGNPFECTCDIGDFRRWMDEHLNVKIPRLVDVICASPGDQRGKSIVSLE: 818
                :     ***********************************************************************************:
7r54_B_1     705:XXXXXSSLKHLDLSSNLLKTINKSALETKTTTKLSMLELHGNPFECTCDIGDFRRWMDEHLNVKIPRLVDVICASPGDQRGKSIVSLE: 792
SecStr          :-----    EEE  SS      GGGG   S     EEE TT  EETTTTTHHHHHHHHH TTSB   GGG BEEESGGGTTSBTTS  :    
ExpBur          :-----eebebbbbbebebeebeeeebeeeeeebbeebbbbebebebeeebbebbebbeeeeebebeebbebebeeeeeeeebbbeeee:

Input Residue Numbers for Focused Sites

ex) 2,15,123