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ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(TLR8_HUMAN) | B 1 (B) | polymer(polypeptide(L)) [736 aa] | Toll-like receptor 8 :TLR8_HUMAN | |
2 | b | F 1 (F) | branched(oligosaccharide) | alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | 226K 228F 230S 250L 252D 254S 291Y 293N 462D 464H 466N 467F 468Y (identity: 100.0 %/93.4 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:7r53_B_1 identity=93.4% |
queryA 31:SRSYPCDEKKQNDSVIAECSNRRLQEVPQTVGKYVTELDLSDNFITHITNESFQGLQNLTKINLNHNPNVQHQNGNPGIQSNGLNITDGAFLNLKNLREL: 130 :********************************************************************** ******************: 7r53_B_1 5:SRSYPCDEKKQNDSVIAECSNRRLQEVPQTVGKYVTELDLSDNFITHITNESFQGLQNLTKINLNHNPNVXXXXXXXXXXXXGLNITDGAFLNLKNLREL: 104 SecStr : SSEEEE SSSEEEE SS SS S S TT SEEE SS EE TTSS S TT EEE SSS ------------ EE TTTTSS TT EE: ExpBur :ebeebbeeeeeeeeebbebeebebeebbeebeeebbebebbebebeebeeebbeebeebeebbbbebeee------------ebebeeebbeebeebeeb: queryA 131:LLEDNQLPQIPSGLPESLTELSLIQNNIYNITKEGISRLINLKNLYLAWNCYFNKVCEKTNIEDGVFETLTNLELLSLSFNSLSHVPPKLPSSLRKLFLS: 230 :************************************************** ******************************************: 7r53_B_1 105:LLEDNQLPQIPSGLPESLTELSLIQNNIYNITKEGISRLINLKNLYLAWNXXXXXXXXKTNIEDGVFETLTNLELLSLSFNSLSHVPPKLPSSLRKLFLS: 204 SecStr :E SS SS SS TT SEEE SS EE TTTSTT TT SEEE -------- EE TTSGGG TT EEE SS S SS TT EEE T: ExpBur :bbbebebeebbeebbebbbebbbbebebeebeeebbbebeebebbebbeb--------ebeebebbbeebeebebbbbbebebeebbeebbeebeebebb: Contact : b b b queryA 231:NTQIKYISEEDFKGLINLTLLDLSGNCPRCFNAPFPCVPCDGGASINIDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNMPHLKVLDLEFNYLVGEIASG: 330 :****************************************************************************************************: 7r53_B_1 205:NTQIKYISEEDFKGLINLTLLDLSGNCPRCFNAPFPCVPCDGGASINIDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNMPHLKVLDLEFNYLVGEIASG: 304 SecStr :TS EE GGGSSS TT EEE TTSS SS SS SSS EE TTTTTT TT EEE SS S GGGGTT TT EEE SS HHHHHH : ExpBur :bbebeebeeeebeebeebbbbbbbbbbbbeeeeebeeeebeeeeebebeeebbeebeebeebbbbbbbbeebeebbbeebeebebbbbbbbebeebbeeb: Contact : b b b b b queryA 331:AFLTMLPRLEILDLSFNYIKGSYPQHINISRNFSKLLSLRALHLRGYVFQELREDDFQPLMQLPNLSTINLGINFIKQIDFKLFQNFSNLEIIYLSENRI: 430 :****************************************************************************************************: 7r53_B_1 305:AFLTMLPRLEILDLSFNYIKGSYPQHINISRNFSKLLSLRALHLRGYVFQELREDDFQPLMQLPNLSTINLGINFIKQIDFKLFQNFSNLEIIYLSENRI: 404 SecStr :GGGGG TT EEE S TT SS GGGGG TT EEE TT SEE TGGGGGGTT SS EEE S SEE GGGGGG SS EEE TT : ExpBur :ebbeebeebeebbbbbbeeeeeeeeebebbeebebbeebebbbbbbbbbbebeeebbebbbebeebebbbbbbbebeebebebbeebeebeebbbbebeb: queryA 431:SPLVKDTRQSYANSSSFQRHIRKRRSTDFEFDPHSNFYHFTRPLIKPQCAAYGKALDLSLNSIFFIGPNQFENLPDIACLNLSANSNAQVLSGTEFSAIP: 530 :*** *********************************************************************: 7r53_B_1 405:SPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXDPHSNFYHFTRPLIKPQCAAYGKALDLSLNSIFFIGPNQFENLPDIACLNLSANSNAQVLSGTEFSAIP: 504 SecStr : ---------------------------- TTS SSS S SS HHHHTTSEEEE SSS SS TTSSTT EEEEE SS B S TTSSST: ExpBur :ebe----------------------------eeeeeebbeeeebbeeebeeeeebbbbbebebeebbeebbeebbebbbbbbbebebbbebeeebbeebe: Contact : b b bbb queryA 531:HVKYLDLTNNRLDFDNASALTELSDLEVLDLSYNSHYFRIAGVTHHLEFIQNFTNLKVLNLSHNNIYTLTDKYNLESKSLVELVFSGNRLDILWNDDDNR: 630 :*********************************************************************************************** *: 7r53_B_1 505:HVKYLDLTNNRLDFDNASALTELSDLEVLDLSYNSHYFRIAGVTHHLEFIQNFTNLKVLNLSHNNIYTLTDKYNLESKSLVELVFSGNRLDILWNXXXXR: 604 SecStr :T SEEE S B STTTTTT TT EEE TT SS TTTSS GGGGG SS EEE TTS SS S B SS EEE TTS HHHHT ---- : ExpBur :ebebbbbbebebbbbeeebbbbbeebbbbbbbebebeeeeeeebbbbbbbeebeebeebbbbebebeebbebebbebebbeebbbbebebeebbe----e: queryA 631:YISIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTELHINDNMLKFFNWTLLQQFPRLELLDLRGNKLLFLTDSLSDFTSSLRTLLLSHNRISHLPSG: 730 :****************************************************************************************************: 7r53_B_1 605:YISIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTELHINDNMLKFFNWTLLQQFPRLELLDLRGNKLLFLTDSLSDFTSSLRTLLLSHNRISHLPSG: 704 SecStr : TTSSTB TT EEE SS S HHHHHTS TT SEEE SS S GGGGGG TT EEE SS S GGGT S EEE SS TT: ExpBur :beebbebbeebeebbbbebebeebbeebbebbbebbeebbbbebebeebebebbeebeebebbbbeebebeebbeebeebbebbbebbbbebebeebbeb: queryA 731:FLSEVSSLKHLDLSSNLLKTINKSALETKTTTKLSMLELHGNPFECTCDIGDFRRWMDEHLNVKIPRLVDVICASPGDQRGKSIVSLE: 818 :****************************************************************************************: 7r53_B_1 705:FLSEVSSLKHLDLSSNLLKTINKSALETKTTTKLSMLELHGNPFECTCDIGDFRRWMDEHLNVKIPRLVDVICASPGDQRGKSIVSLE: 792 SecStr :HHHH TT EEE TTS TTTT SS EEE TT EE SGGGHHHHHHHHH TTSB GGG BEEESTTTBTSBGGG : ExpBur :bbbebeebebbbbbebebeebeeebbeeeeeeebeebbbbebebebeeebeebbebbeebeebebeebbbbebeeeeebeeebbbeee: |