Protein Model on 5awc_B_1_F_1 (TEMPLATE: 5awc )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)		 type description a(query A)
1 a A(TLR8_HUMAN) B 1 (B) polymer(polypeptide(L)) [742 aa] Toll-like receptor 8 :TLR8_HUMAN
2 b F 1 (F) branched(oligosaccharide) 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose 569R (identity: 100.0 %/94.3 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:5awc_B_1 identity=94.3%
queryA        31:SRSYPCDEKKQNDSVIAECSNRRLQEVPQTVGKYVTELDLSDNFITHITNESFQGLQNLTKINLNHNPNVQHQNGNPGIQSNGLNITDGAFLNLKNLREL: 130
                :***********   ********************************************************            ******************:
5awc_B_1       9:SRSYPCDEKKQXXXVIAECSNRRLQEVPQTVGKYVTELDLSDNFITHITNESFQGLQNLTKINLNHNPNVXXXXXXXXXXXXGLNITDGAFLNLKNLREL: 108
SecStr          :   SSSEE   --- EEE TTS  SS  S   TT SEEE TTS   EE TTSSTT TT  EEE  S S  ------------  EE TTTTTT TT  EE:    
ExpBur          :ebeebbbeeee---eebebeebebeebbeebeeebeebebbebebeebeeeebeebeebbebbbbbbbee------------ebebeebbbeebeebeeb:    

queryA       131:LLEDNQLPQIPSGLPESLTELSLIQNNIYNITKEGISRLINLKNLYLAWNCYFNKVCEKTNIEDGVFETLTNLELLSLSFNSLSHVPPKLPSSLRKLFLS: 230
                :****************************************************************************************************:
5awc_B_1     109:LLEDNQLPQIPSGLPESLTELSLIQNNIYNITKEGISRLINLKNLYLAWNCYFNKVCEKTNIEDGVFETLTNLELLSLSFNSLSHVPPKLPSSLRKLFLS: 208
SecStr          :E  SS  SS  S   TT  EEE  SS   EE HHHHTT TT SEEE  SSS TT S    EE TTTTTT TT  EEE  SS  SS  SS  TT SEEE T:    
ExpBur          :bbbbbebeebbeebbeebbbbbbbbbebbebbeebbbebeebebbebbbbbbeeeeeeebebeebbbeebeebebbbbbbbbbeebbeebbebbeebebb:    

queryA       231:NTQIKYISEEDFKGLINLTLLDLSGNCPRCFNAPFPCVPCDGGASINIDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNMPHLKVLDLEFNYLVGEIASG: 330
                :****************************************************************************************************:
5awc_B_1     209:NTQIKYISEEDFKGLINLTLLDLSGNCPRCFNAPFPCVPCDGGASINIDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNMPHLKVLDLEFNYLVGEIASG: 308
SecStr          :TS   EE SSTTTT TT  EEE TTSS   TT SS    SGGG   EE TTTTTT TT  EEE TTS  S   GGGGTT TT  EEE  SS  HHHHHS :    
ExpBur          :bbebeebbeeebeebeebebbbbbbbbbbbeeeebebeebeeeeebebeeebbeebeebeebbbbbbbbeebebbbbeebeebebbbbbebebbebbeeb:    

queryA       331:AFLTMLPRLEILDLSFNYIKGSYPQHINISRNFSKLLSLRALHLRGYVFQELREDDFQPLMQLPNLSTINLGINFIKQIDFKLFQNFSNLEIIYLSENRI: 430
                :****************************************************************************************************:
5awc_B_1     309:AFLTMLPRLEILDLSFNYIKGSYPQHINISRNFSKLLSLRALHLRGYVFQELREDDFQPLMQLPNLSTINLGINFIKQIDFKLFQNFSNLEIIYLSENRI: 408
SecStr          :GGGGS TT  EEE  S   TT   SB    GGGGG TT  EEE TT   SEE GGGGHHHHT TT  EEE TTS   EE GGGGGGSS  SEEE  SS  :    
ExpBur          :ebbeebeebeebbbbbbbeeeeeeeebebbeebeebeebebbbbbbbbbeebeeebbebbbebeebebbbbbebebeebebebbeebeebebbbbbebeb:    

queryA       431:SPLVKDTRQSYANSSSFQRHIRKRRSTDFEFDPHSNFYHFTRPLIKPQCAAYGKALDLSLNSIFFIGPNQFENLPDIACLNLSANSNAQVLSGTEFSAIP: 530
                :**                         *************************************************************************:
5awc_B_1     409:SPXXXXXXXXXXXXXXXXXXXXXXXXXDFEFDPHSNFYHFTRPLIKPQCAAYGKALDLSLNSIFFIGPNQFENLPDIACLNLSANSNAQVLSGTEFSAIP: 508
SecStr          :  -------------------------  SS TTS SSS  S SS HHHHTTS EEE TTS   S  TTTTTT    SEEE TTS       S TTTTST:    
ExpBur          :ee-------------------------eeebebeeebbeeeeeebeeebeeebebbbbbebebeebbeebbeebbebbbbbbbebebebebebebbeebe:    

queryA       531:HVKYLDLTNNRLDFDNASALTELSDLEVLDLSYNSHYFRIAGVTHHLEFIQNFTNLKVLNLSHNNIYTLTDKYNLESKSLVELVFSGNRLDILWNDDDNR: 630
                :****************************************************************************************************:
5awc_B_1     509:HVKYLDLTNNRLDFDNASALTELSDLEVLDLSYNSHYFRIAGVTHHLEFIQNFTNLKVLNLSHNNIYTLTDKYNLESKSLVELVFSGNRLDILWNDDDNR: 608
SecStr          :T  EEE  SS      TTTTTT TT  EEE  S HHHHT TTS    GGGGG TT  EEE TTS     SS     BSS  EEE TTS HHHHT TT  T:    
ExpBur          :ebebbbbbebebebeeeebbebbeebbbbbbbebeeebeeeeeebbbbbbeebeebeebbbbebebebbeeeeebebebbeebbbbbbbbeebbeeebee:    
Contact         :                                      b                                                             

queryA       631:YISIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTELHINDNMLKFFNWTLLQQFPRLELLDLRGNKLLFLTDSLSDFTSSLRTLLLSHNRISHLPSG: 730
                :****************************************************************************************************:
5awc_B_1     609:YISIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTELHINDNMLKFFNWTLLQQFPRLELLDLRGNKLLFLTDSLSDFTSSLRTLLLSHNRISHLPSG: 708
SecStr          :TTTTTTTBTT  EEE  SS  S   HHHHHTS TT SEEE  SS  S   GGGGGG TT  EEE  SS      S  TTT S   EEE  SS      TT:    
ExpBur          :bbebbeebeebeebbbbebebeebbeebbebbbeebeebbbbebebeebebebbeebeebeebbbebbebeebbeebeebbebbebbbbbebebeebbee:    

queryA       731:FLSEVSSLKHLDLSSNLLKTINKSALETKTTTKLSMLELHGNPFECTCDIGDFRRWMDEHLNVKIPRLVDVICASPGDQRGKSIVSL: 817
                :**************************     ********************************************************:
5awc_B_1     709:FLSEVSSLKHLDLSSNLLKTINKSALXXXXXTKLSMLELHGNPFECTCDIGDFRRWMDEHLNVKIPRLVDVICASPGDQRGKSIVSL: 795
SecStr          :SSSS TT  EEE  SS      TTT -----    EEE TT  EE SSSSHHHHHHHHH  SSB   GGGSBEEESTTTTTSBTT  :    
ExpBur          :bbeebebbeebbbbebebeebeeebe-----eebeebbbbebebebeeebbebeebbeeeeebebbebbbbebeeeeebeeebbbee:

Input Residue Numbers for Focused Sites

ex) 2,15,123