Protein Model on 4r6a_B_1_F_1
(TEMPLATE: 
4r6a
)Protein Model on 4r6a_B_1_F_1
(TEMPLATE: 4r6a
)| CurrentView:HTML5 Change to:[JAVA] |
DOWNLOAD: [sequence-replaced 3D model]
[for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(TLR8_HUMAN) | B 1 (B) | polymer(polypeptide(L)) [740 aa] | Toll-like receptor 8 :TLR8_HUMAN | |
| 2 | b | F 1 (F) | branched(oligosaccharide) | alpha-D-mannopyranose-(1-6)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | 226K 228F 230S 250L 252D 254S 291Y 293N 462D 464H 465S 466N 467F 468Y (identity: 100.0 %/94.1 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:4r6a_B_1 identity=94.1% |
queryA 31:SRSYPCDEKKQNDSVIAECSNRRLQEVPQTVGKYVTELDLSDNFITHITNESFQGLQNLTKINLNHNPNVQHQNGNPGIQSNGLNITDGAFLNLKNLREL: 130
:*********** ******************************************************** ******************:
4r6a_B_1 9:SRSYPCDEKKQXXXVIAECSNRRLQEVPQTVGKYVTELDLSDNFITHITNESFQGLQNLTKINLNHNPNVXXXXXXXXXXXXGLNITDGAFLNLKNLREL: 108
SecStr : SSEEE --- EEE SS SS S TT EEE SS EE TTTTTTT SEEE S S ------------ EE TTTTTT TT EE:
ExpBur :ebeebbbeeee---eebebeebebeebbeebeeebeebebbebebeebbeeebeebeebbbbbbbebbee------------ebebeeebbeebeebeeb:
queryA 131:LLEDNQLPQIPSGLPESLTELSLIQNNIYNITKEGISRLINLKNLYLAWNCYFNKVCEKTNIEDGVFETLTNLELLSLSFNSLSHVPPKLPSSLRKLFLS: 230
:****************************************************************************************************:
4r6a_B_1 109:LLEDNQLPQIPSGLPESLTELSLIQNNIYNITKEGISRLINLKNLYLAWNCYFNKVCEKTNIEDGVFETLTNLELLSLSFNSLSHVPPKLPSSLRKLFLS: 208
SecStr :E SS SS SS TT SEEE SS EE HHHHTT TT SEEE SSS TT EE TTTTTT TT EEE SS SS S TT SEEE T:
ExpBur :bbbebebeebbebbbebbbebbbbbbebbebbeebbbebeebebbebbbbbbeeeebeebeeeebbbeebeebebbbbbbbbbeebbeebbebbeebebb:
Contact : b b b
queryA 231:NTQIKYISEEDFKGLINLTLLDLSGNCPRCFNAPFPCVPCDGGASINIDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNMPHLKVLDLEFNYLVGEIASG: 330
:****************************************************************************************************:
4r6a_B_1 209:NTQIKYISEEDFKGLINLTLLDLSGNCPRCFNAPFPCVPCDGGASINIDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNMPHLKVLDLEFNYLVGEIASG: 308
SecStr :TS EE GGGS TT EEE TTSS TT SS SGGG EE TTTTTT TT EEE TTS S THHHHT TT EEE SS HHHHHH :
ExpBur :bbebeebbeebbebbeebebbbbbbbbbbbeeeebeeeebeeeeebebeeebbeebeebeebbbbbbbbeebeeebbeebeebebbbbbebebbebbeeb:
Contact : b b b b b
queryA 331:AFLTMLPRLEILDLSFNYIKGSYPQHINISRNFSKLLSLRALHLRGYVFQELREDDFQPLMQLPNLSTINLGINFIKQIDFKLFQNFSNLEIIYLSENRI: 430
:****************************************************************************************************:
4r6a_B_1 309:AFLTMLPRLEILDLSFNYIKGSYPQHINISRNFSKLLSLRALHLRGYVFQELREDDFQPLMQLPNLSTINLGINFIKQIDFKLFQNFSNLEIIYLSENRI: 408
SecStr :GGGGG TT EEE S TT SS GGGGG TT EEE TT SEE GGGGGGGTT TT EEE SS EE GGGGGGSS SEEE SS :
ExpBur :ebbeebeebeebbbbebbeeeeeeeebebbeebeebeebebbbbbbbbbeebeeebbebbbebeebebbbbbebebeebebebbeebeebebbbbbebeb:
queryA 431:SPLVKDTRQSYANSSSFQRHIRKRRSTDFEFDPHSNFYHFTRPLIKPQCAAYGKALDLSLNSIFFIGPNQFENLPDIACLNLSANSNAQVLSGTEFSAIP: 530
:*** ************************************************************************:
4r6a_B_1 409:SPLXXXXXXXXXXXXXXXXXXXXXXXXXFEFDPHSNFYHFTRPLIKPQCAAYGKALDLSLNSIFFIGPNQFENLPDIACLNLSANSNAQVLSGTEFSAIP: 508
SecStr : ------------------------- S TTS SSS S SS HHHHTTSEEEE SS S TTTTTT EEEEE SS S TTTTST:
ExpBur :eee-------------------------eebebeeebbeeeeebbeeebeeeeebbbbbebebeebbeebbeebbebbbbbbbebebebebebebbeebe:
Contact : b bbbbb
queryA 531:HVKYLDLTNNRLDFDNASALTELSDLEVLDLSYNSHYFRIAGVTHHLEFIQNFTNLKVLNLSHNNIYTLTDKYNLESKSLVELVFSGNRLDILWNDDDNR: 630
:****************************************************************************************************:
4r6a_B_1 509:HVKYLDLTNNRLDFDNASALTELSDLEVLDLSYNSHYFRIAGVTHHLEFIQNFTNLKVLNLSHNNIYTLTDKYNLESKSLVELVFSGNRLDILWNDDDNR: 608
SecStr :T SEEE SS TTTTTT TT EEE S HHHHT TTS GGGGG SS EEE TT SS BSS EEE TTS HHHHT TT T:
ExpBur :ebebbbbbebebebeeeebbbbbeebbbbbbbebeeebeeeeeebbbbbbeebeebeebbbbebebeebbeeeebebebbeebbbbbbbbeebbeeebee:
queryA 631:YISIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTELHINDNMLKFFNWTLLQQFPRLELLDLRGNKLLFLTDSLSDFTSSLRTLLLSHNRISHLPSG: 730
:****************************************************************************************************:
4r6a_B_1 609:YISIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTELHINDNMLKFFNWTLLQQFPRLELLDLRGNKLLFLTDSLSDFTSSLRTLLLSHNRISHLPSG: 708
SecStr :TTTTTTTBTT EEE SS S HHHHHTS TT SEEE SS S GGGGGG TT EEE SS S HHHH S EEE SS SS:
ExpBur :bbebbeebeebeebbbbebebeebeeebbebbbeebeebbbbebebeebebebbeebeebeebbbeebebeebbeebeebbebbebbbbbebebeebeee:
queryA 731:FLSEVSSLKHLDLSSNLLKTINKSALETKTTTKLSMLELHGNPFECTCDIGDFRRWMDEHLNVKIPRLVDVICASPGDQRGKSIVS: 816
:************************ ********************************************************:
4r6a_B_1 709:FLSEVSSLKHLDLSSNLLKTINKSXXXXXXTTKLSMLELHGNPFECTCDIGDFRRWMDEHLNVKIPRLVDVICASPGDQRGKSIVS: 794
SecStr :SSS TT EEE TTS ------ SEEE TT EE SGGGHHHHHHHHH TTSB GGGSBEEESTTTTTSBTT :
ExpBur :bbbebeebebbbbbebebebbeee------ebebeebbbbebebebeeebeebeebbeeeeebebbebbebebeeeeeeeeebbbe:
|
[assembly_id:1]
[help]