[pdbjlvh2]Protein Model on 4qc0_B_1_F

Protein Model on 4qc0_B_1_F_1 (TEMPLATE: 4qc0 )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(TLR8_HUMAN)	B 1 (B)	polymer(polypeptide(L)) [745 aa]	Toll-like receptor 8 :TLR8_HUMAN
2	b		F 1 (F)	branched(oligosaccharide)	beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose	476K 478Q 534Y 560D 562S 588V 590N 612E 614V (identity: 100.0 %/94.8 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:4qc0_B_1 identity=94.8%

queryA        31:SRSYPCDEKKQNDSVIAECSNRRLQEVPQTVGKYVTELDLSDNFITHITNESFQGLQNLTKINLNHNPNVQHQNGNPGIQSNGLNITDGAFLNLKNLREL: 130
                :************  ********************************************************            ******************:
4qc0_B_1       9:SRSYPCDEKKQNXXVIAECSNRRLQEVPQTVGKYVTELDLSDNFITHITNESFQGLQNLTKINLNHNPNVXXXXXXXXXXXXGLNITDGAFLNLKNLREL: 108
SecStr          :    SSEEE   -- EEE  SS  SS  S   TT SEEE  SS   EE TTTTTT TT SEEE  S S  ------------  EE TTTTTT TT  EE:    
ExpBur          :ebeebbbeeeee--ebbebeebebeebbeebeeebeebebbebebeebeeebbeebeebbebbbbebbee------------ebebeebbbeebeebebb:    

queryA       131:LLEDNQLPQIPSGLPESLTELSLIQNNIYNITKEGISRLINLKNLYLAWNCYFNKVCEKTNIEDGVFETLTNLELLSLSFNSLSHVPPKLPSSLRKLFLS: 230
                :****************************************************************************************************:
4qc0_B_1     109:LLEDNQLPQIPSGLPESLTELSLIQNNIYNITKEGISRLINLKNLYLAWNCYFNKVCEKTNIEDGVFETLTNLELLSLSFNSLSHVPPKLPSSLRKLFLS: 208
SecStr          :E  SS  SS  S   TT SEEE TTS   EE HHHHTT TT SEEE  SSS TTSS    EE TTTTTT TT  EEE  SS  SS  S   TT  EEE T:    
ExpBur          :bbbebebeebbeebbeebbebbbbebebbebbeebbbebeebebbebbbbbeeeeeeeebeeeebbbeebeebebbbbbbbbbeebbeebbebbeebebb:    

queryA       231:NTQIKYISEEDFKGLINLTLLDLSGNCPRCFNAPFPCVPCDGGASINIDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNMPHLKVLDLEFNYLVGEIASG: 330
                :****************************************************************************************************:
4qc0_B_1     209:NTQIKYISEEDFKGLINLTLLDLSGNCPRCFNAPFPCVPCDGGASINIDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNMPHLKVLDLEFNYLVGEIASG: 308
SecStr          :TS   EE TTSSTT TT SEEE TTSS   TT SS     GGG   EE TTTTTT TT  EEE  SS  S   GGGGTT TT  EEE  SS THHHHHS :    
ExpBur          :bbebeebbeebbeebeebebbbbbbbbbbbeeeebebeebeeeeebebbeebbeebeebeebbbbbbbbeebebbbbeebeebebbbbbebebbebbeeb:    

queryA       331:AFLTMLPRLEILDLSFNYIKGSYPQHINISRNFSKLLSLRALHLRGYVFQELREDDFQPLMQLPNLSTINLGINFIKQIDFKLFQNFSNLEIIYLSENRI: 430
                :****************************************************************************************************:
4qc0_B_1     309:AFLTMLPRLEILDLSFNYIKGSYPQHINISRNFSKLLSLRALHLRGYVFQELREDDFQPLMQLPNLSTINLGINFIKQIDFKLFQNFSNLEIIYLSENRI: 408
SecStr          :SGGGG TT  EEE  S   TT   SS    GGGGG TT  EEE TT   SEE TTTTGGGTT TT  EEE  SS   EE GGGGGGSS   EEE  SS  :    
ExpBur          :ebbeebeebeebbbbebbeeeeeeeebebbeebeebeebebbbbebbbbbebeeebbebbbebeebebbbbbebebeebebebbeebeebeebbbbebeb:    

queryA       431:SPLVKDTRQSYANSSSFQRHIRKRRSTDFEFDPHSNFYHFTRPLIKPQCAAYGKALDLSLNSIFFIGPNQFENLPDIACLNLSANSNAQVLSGTEFSAIP: 530
                :**                           ***********************************************************************:
4qc0_B_1     409:SPXXXXXXXXXXXXXXXXXXXXXXXXXXXEFDPHSNFYHFTRPLIKPQCAAYGKALDLSLNSIFFIGPNQFENLPDIACLNLSANSNAQVLSGTEFSAIP: 508
SecStr          :  ---------------------------   TTS SSS  S SS HHHHTTS EEE  SS      TTTTTT    SEEE  SS       S TTTTST:    
ExpBur          :ee---------------------------eeeeeeebbeeeeeebeeebeeeeebbbbbebebeebbeebbeebbebbbbbbbebebebebebebbeebe:    
Contact         :                                             b b                                                    

queryA       531:HVKYLDLTNNRLDFDNASALTELSDLEVLDLSYNSHYFRIAGVTHHLEFIQNFTNLKVLNLSHNNIYTLTDKYNLESKSLVELVFSGNRLDILWNDDDNR: 630
                :****************************************************************************************************:
4qc0_B_1     509:HVKYLDLTNNRLDFDNASALTELSDLEVLDLSYNSHYFRIAGVTHHLEFIQNFTNLKVLNLSHNNIYTLTDKYNLESKSLVELVFSGNRLDILWNDDDNR: 608
SecStr          :T  EEE  SS      TTTTTT TT  EEE  S HHHHT TTS    GGGGG SS  EEE TTS     SS     BSS  EEE TTS HHHHT TT  T:    
ExpBur          :ebebbbbbebebbbeeeebbebbeebbbbbbbebeeebeeeeeebbbbbbeebeebeebbbbebebebbbeeeebebebbeebbbbbbbbeebbeeebee:    
Contact         :   b                         b b                         b b                     b b                

queryA       631:YISIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTELHINDNMLKFFNWTLLQQFPRLELLDLRGNKLLFLTDSLSDFTSSLRTLLLSHNRISHLPSG: 730
                :****************************************************************************************************:
4qc0_B_1     609:YISIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTELHINDNMLKFFNWTLLQQFPRLELLDLRGNKLLFLTDSLSDFTSSLRTLLLSHNRISHLPSG: 708
SecStr          :TTTTTTTBTT  EEE  SS  S   HHHHHTS TT SEEE  SS      GGGGGG TT  EEE TTS      S GGGT SS  EEE  SS      TT:    
ExpBur          :bbebbebbeebeebbbbebebeebeeebbebbbeebeebbbbebebeebebebbeebeebeebbbeebebeebbeebeebbebbebbbbbebebeebbeb:    

queryA       731:FLSEVSSLKHLDLSSNLLKTINKSALETKTTTKLSMLELHGNPFECTCDIGDFRRWMDEHLNVKIPRLVDVICASPGDQRGKSIVS: 816
                :**************************************************************************************:
4qc0_B_1     709:FLSEVSSLKHLDLSSNLLKTINKSALETKTTTKLSMLELHGNPFECTCDIGDFRRWMDEHLNVKIPRLVDVICASPGDQRGKSIVS: 794
SecStr          : TTT TT  EEE  SS      TTTTT SS    SEEE TT  EE SGGGHHHHHHHHH TTSB S GGGSBEEESSS SSSBTT :    
ExpBur          :bbbbbebbeebbbbebebebbeebbbebeeebebeebbbbebebebeeebeebeebbeebeebebbebbebebeeeeeeeeebbee:

Protein Model on 4qc0_B_1_F_1 (TEMPLATE: 4qc0 )

Input Residue Numbers for Focused Sites