[pdbjlvh2]Protein Model on 4r08_B_1_CA

Protein Model on 4r08_B_1_CA_1 (TEMPLATE: 4r08 )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(TLR8_HUMAN)	B 1 (B)	polymer(polypeptide(L)) [737 aa]	Toll-like receptor 8 :TLR8_HUMAN
2	b		CA 1 (B)	non-polymer(NAG)	2-acetamido-2-deoxy-beta-D-glucopyranose	656N 680N 682T 683L (identity: 100.0 %/93.8 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:4r08_B_1 identity=93.8%

queryA        32:RSYPCDEKKQNDSVIAECSNRRLQEVPQTVGKYVTELDLSDNFITHITNESFQGLQNLTKINLNHNPNVQHQNGNPGIQSNGLNITDGAFLNLKNLRELL: 131
                :*********    ********************************************************            *******************:
4r08_B_1      10:RSYPCDEKKXXXXVIAECSNRRLQEVPQTVGKYVTELDLSDNFITHITNESFQGLQNLTKINLNHNPNVXXXXXXXXXXXXGLNITDGAFLNLKNLRELL: 109
SecStr          :  SSSEE  ---- EEE  SS  SS  S   TT SEEE TTS   EE TTTTTT     EEE  S S  ------------  EE TTTTTT TT  EEE:    
ExpBur          :eeebbebee----eebebeebebeebbeebbeebeebebbebebeebeeebbeebeebeebbbbebeee------------ebebeebbbeebeebeebb:    

queryA       132:LEDNQLPQIPSGLPESLTELSLIQNNIYNITKEGISRLINLKNLYLAWNCYFNKVCEKTNIEDGVFETLTNLELLSLSFNSLSHVPPKLPSSLRKLFLSN: 231
                :****************************************************************************************************:
4r08_B_1     110:LEDNQLPQIPSGLPESLTELSLIQNNIYNITKEGISRLINLKNLYLAWNCYFNKVCEKTNIEDGVFETLTNLELLSLSFNSLSHVPPKLPSSLRKLFLSN: 209
SecStr          :  SS  SS  SS  TT SEEE  SS   EE HHHHTT TT SEEE  SSS TT      EE TTTTTT TT  EEE  SS  SS  S   TT SEEE TT:    
ExpBur          :bbebebeebbbbbbebbbbbbbbbbebbebbeebbbebeebeebebbbbbbeeeeeeebeeeebbbeebeebebbbbbbbbbeebbeebbebbeebebbb:    

queryA       232:TQIKYISEEDFKGLINLTLLDLSGNCPRCFNAPFPCVPCDGGASINIDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNMPHLKVLDLEFNYLVGEIASGA: 331
                :****************************************************************************************************:
4r08_B_1     210:TQIKYISEEDFKGLINLTLLDLSGNCPRCFNAPFPCVPCDGGASINIDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNMPHLKVLDLEFNYLVGEIASGA: 309
SecStr          :S   EE TTTTTT TT  EEE TTSS   TT SS    SGGG   EE TTTTTT TT  EEE TTS  S   GGGGTT TT  EEE  SS  HHHHHS S:    
ExpBur          :bebeebbeebbeebeebebbbbbbbbbbbeeeebebeebeeeeebebeeebbeebeebeebbbbbbbbeebeebbbeebeebebbbbbebebbebbeebe:    

queryA       332:FLTMLPRLEILDLSFNYIKGSYPQHINISRNFSKLLSLRALHLRGYVFQELREDDFQPLMQLPNLSTINLGINFIKQIDFKLFQNFSNLEIIYLSENRIS: 431
                :****************************************************************************************************:
4r08_B_1     310:FLTMLPRLEILDLSFNYIKGSYPQHINISRNFSKLLSLRALHLRGYVFQELREDDFQPLMQLPNLSTINLGINFIKQIDFKLFQNFSNLEIIYLSENRIS: 409
SecStr          :GGGG TT  EEE  S   TT   SS    GGGGG TT  EEE TT   SEE GGGGGGGTT TT  EEE TTS   EE THHHHTSS  SEEE  SS   :    
ExpBur          :bbeebeebeebbbbebbeeeeeeeebebbeebeebeebebbbbbbbbbeebebebbebbbebeebebbbbbebebeebebebbeebeebebbbbbebebe:    

queryA       432:PLVKDTRQSYANSSSFQRHIRKRRSTDFEFDPHSNFYHFTRPLIKPQCAAYGKALDLSLNSIFFIGPNQFENLPDIACLNLSANSNAQVLSGTEFSAIPH: 531
                :*                          *************************************************************************:
4r08_B_1     410:PXXXXXXXXXXXXXXXXXXXXXXXXXXFEFDPHSNFYHFTRPLIKPQCAAYGKALDLSLNSIFFIGPNQFENLPDIACLNLSANSNAQVLSGTEFSAIPH: 509
SecStr          : --------------------------  S TTS SSS  S SS HHHHTTS EEE  SS   S  TTTTTT    SEEE  SS       S TTTTSTT:    
ExpBur          :e--------------------------eebebeeebbeeeeebbeeebeeeeebbbbbebebeebbeebbeebbebbbbbbbebebebebebebbeebee:    

queryA       532:VKYLDLTNNRLDFDNASALTELSDLEVLDLSYNSHYFRIAGVTHHLEFIQNFTNLKVLNLSHNNIYTLTDKYNLESKSLVELVFSGNRLDILWNDDDNRY: 631
                :****************************************************************************************************:
4r08_B_1     510:VKYLDLTNNRLDFDNASALTELSDLEVLDLSYNSHYFRIAGVTHHLEFIQNFTNLKVLNLSHNNIYTLTDKYNLESKSLVELVFSGNRLDILWNDDDNRY: 609
SecStr          :  EEE  S       TTTTTT TT  EEE  S GGGTT TTS    GGGGG SS  EEE TTS     SS     BSS  EEE  SS HHHHT TT  TT:    
ExpBur          :bebbbbbebebbbeeeebbebbeebbbbbbbebbeebeeeeeebbbbbbeebeebeebebbebbbeebeeeeebebebbeebbbbbbebeebbeeeeeeb:    

queryA       632:ISIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTELHINDNMLKFFNWTLLQQFPRLELLDLRGNKLLFLTDSLSDFTSSLRTLLLSHNRISHLPSGF: 731
                :****************************************************************************************************:
4r08_B_1     610:ISIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTELHINDNMLKFFNWTLLQQFPRLELLDLRGNKLLFLTDSLSDFTSSLRTLLLSHNRISHLPSGF: 709
SecStr          :TTTTTTBTT  EEE  SS  S   HHHHTTS TT SEEE  SS  S   GGGGGG TT  EEE  SS      S HHHH S   EEE  SS      TTG:    
ExpBur          :bebbebbeebeebbbbebebeebbeebbebbbebbeebbbbebebeebebebbeebeebeebbbeebebeebbeebeebbebbebbbbbebebeebbeeb:    
Contact         :                        b                       b bb                                                

queryA       732:LSEVSSLKHLDLSSNLLKTINKSALETKTTTKLSMLELHGNPFECTCDIGDFRRWMDEHLNVKIPRLVDVICASPGDQRGKSIVSL: 817
                :************************       *******************************************************:
4r08_B_1     710:LSEVSSLKHLDLSSNLLKTINKSAXXXXXXXKLSMLELHGNPFECTCDIGDFRRWMDEHLNVKIPRLVDVICASPGDQRGKSIVSL: 795
SecStr          :GGT SS  EEE  SS  S   S  -------   EEE TT  EE SGGGHHHHHHHHTTTTSB   GGGSBEEESTTTTTSBTT  :    
ExpBur          :bebbebbeebbbbebebebbeeeb-------ebeebbbeebebebeeebbebeebbeeeeebebeebbebebeeeeebeeebbeee:

Protein Model on 4r08_B_1_CA_1 (TEMPLATE: 4r08 )

Input Residue Numbers for Focused Sites