Protein Model on 5z15_B_1_A_1 (TEMPLATE: 5z15 )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)		 type description a(query A)
1 a A(TLR8_HUMAN) B 1 (B) polymer(polypeptide(L)) [738 aa] Toll-like receptor 8 :TLR8_HUMAN
2 b A 1 (A) polymer(polypeptide(L)) [743 aa] Toll-like receptor 8 :TLR8_HUMAN 185K 261F 262N 264P 265F 266P 320F 351G 352S 353Y 378V 405F 407K 429R 431S 434V 461F 492S 494F 495F 520V 566H 568F 572G 573V 574T (identity: 100.0 %/93.9 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:5z15_B_1 identity=93.9%
queryA        33:SYPCDEKKQNDSVIAECSNRRLQEVPQTVGKYVTELDLSDNFITHITNESFQGLQNLTKINLNHNPNVQHQNGNPGIQSNGLNITDGAFLNLKNLRELLL: 132
                :*******   ********************************************************              ********************:
5z15_B_1      11:SYPCDEKXXXDSVIAECSNRRLQEVPQTVGKYVTELDLSDNFITHITNESFQGLQNLTKINLNHNPXXXXXXXXXXXXXXGLNITDGAFLNLKNLRELLL: 110
SecStr          :  SSEE ---   EEE TTS  SS  S   TT SEEE  SS   EE TTTTTT  S  EEE  S  --------------  EE TTSSTT TT  EEE :    
ExpBur          :eebbbee---eeeebebeebebeebbeebeeebeebebbebebeebeeebbeebeebeebbbbebe--------------ebebeeebbeebeebeebbb:    

queryA       133:EDNQLPQIPSGLPESLTELSLIQNNIYNITKEGISRLINLKNLYLAWNCYFNKVCEKTNIEDGVFETLTNLELLSLSFNSLSHVPPKLPSSLRKLFLSNT: 232
                :****************************************************************************************************:
5z15_B_1     111:EDNQLPQIPSGLPESLTELSLIQNNIYNITKEGISRLINLKNLYLAWNCYFNKVCEKTNIEDGVFETLTNLELLSLSFNSLSHVPPKLPSSLRKLFLSNT: 210
SecStr          : SS  SS  SS  TT SEEE  SS   EE HHHHTT TT  EEE  SSSSSSSS SS EE TTTTTT TT  EEE  SS  SS  S   TT SEEE TTS:    
ExpBur          :bebebeebbbebbebbebbbbbbbebeebeeebbbebeebeebebbbbbeeeeebeebeeeebbbeebeebebbbbbbbbbeebbeebbebbeebebbeb:    
Contact         :                                                    b                                               

queryA       233:QIKYISEEDFKGLINLTLLDLSGNCPRCFNAPFPCVPCDGGASINIDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNMPHLKVLDLEFNYLVGEIASGAF: 332
                :****************************************************************************************************:
5z15_B_1     211:QIKYISEEDFKGLINLTLLDLSGNCPRCFNAPFPCVPCDGGASINIDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNMPHLKVLDLEFNYLVGEIASGAF: 310
SecStr          :   EE TTTTTT  S  EEE TTSS   TT SS    BTTTB  EE SSTTTT TT  EEE  SS  S   GGGGTT TT  EEE  SS  HHHHHS SG:    
ExpBur          :ebeebeeeebeebeebbbbbbbbbbbbbeeeeeeeeebeeeeebebeeebbeebeebeebbbbbbbbeebebbbbeebeebebbbbbebebbebbeebeb:    
Contact         :                            bb bbb                                                     b            

queryA       333:LTMLPRLEILDLSFNYIKGSYPQHINISRNFSKLLSLRALHLRGYVFQELREDDFQPLMQLPNLSTINLGINFIKQIDFKLFQNFSNLEIIYLSENRISP: 432
                :****************************************************************************************************:
5z15_B_1     311:LTMLPRLEILDLSFNYIKGSYPQHINISRNFSKLLSLRALHLRGYVFQELREDDFQPLMQLPNLSTINLGINFIKQIDFKLFQNFSNLEIIYLSENRISP: 410
SecStr          :GGG TT  EEE TT   TT   S     GGGGS TT  EEE TT   SEE GGGGSTTTT TT  EEE  SS  SEE GGGGGS SS  EEE TT     :    
ExpBur          :beebeebeebbbbbbeeeeeeeeebebbebbeebeebebbbbbbbbbeebeeebbebbbebeebbbbbbbbbebeebebebbeebeebebbbbbebebeb:    
Contact         :                  bbb                        b                          b b                     b b 

queryA       433:LVKDTRQSYANSSSFQRHIRKRRSTDFEFDPHSNFYHFTRPLIKPQCAAYGKALDLSLNSIFFIGPNQFENLPDIACLNLSANSNAQVLSGTEFSAIPHV: 532
                :*****                       ************************************************************************:
5z15_B_1     411:LVKDTXXXXXXXXXXXXXXXXXXXXXXXFDPHSNFYHFTRPLIKPQCAAYGKALDLSLNSIFFIGPNQFENLPDIACLNLSANSNAQVLSGTEFSAIPHV: 510
SecStr          :     -----------------------  TTS SSS  S SS HHHHTTS EEE  SS  SS  TTSSTT    SEEE  SS    B  S TTTTSTT :    
ExpBur          :eeeee-----------------------eebeeeebbeeeebbeeebeeeeebbbbbebebeebbebbbeebbebbbbbbbebebebebebebbeebeeb:    
Contact         : b                          b                              b bb                        b            

queryA       533:KYLDLTNNRLDFDNASALTELSDLEVLDLSYNSHYFRIAGVTHHLEFIQNFTNLKVLNLSHNNIYTLTDKYNLESKSLVELVFSGNRLDILWNDDDNRYI: 632
                :************************************   *************************************************************:
5z15_B_1     511:KYLDLTNNRLDFDNASALTELSDLEVLDLSYNSHYFXXXGVTHHLEFIQNFTNLKVLNLSHNNIYTLTDKYNLESKSLVELVFSGNRLDILWNDDDNRYI: 610
SecStr          :SEEE  SS  B  STTTTTT TT  EEE TT     ---   B   HHHH TT  EEE TT     BSS    EESS  EEE TTS HHHHHS TT TTT:    
ExpBur          :ebbbbbebebebeeeebbebbeebebbbbbebeeee---eeebbbebbeebeebeebebbebebeebeebeebebebbeebbbbbbebbebbeeeeeebb:    
Contact         :                                 b b   bbb                                                          

queryA       633:SIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTELHINDNMLKFFNWTLLQQFPRLELLDLRGNKLLFLTDSLSDFTSSLRTLLLSHNRISHLPSGFL: 732
                :****************************************************************************************************:
5z15_B_1     611:SIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTELHINDNMLKFFNWTLLQQFPRLELLDLRGNKLLFLTDSLSDFTSSLRTLLLSHNRISHLPSGFL: 710
SecStr          :TTTTEETT  EEE  SS  S   HHHHHTS TT SEEE  SS  S   TTTTSS TT  EEE  SS      S HHHH S   EEE  SS      SSSS:    
ExpBur          :bbbebbeebeebbbbebebeebbeebbebbbebbbebbbbebebeebebebbeebeebeebbbebbebeebbeebeebbebbebbbbbebebeebbeebe:    

queryA       733:SEVSSLKHLDLSSNLLKTINKSALETKTTTKLSMLELHGNPFECTCDIGDFRRWMDEHLNVKIPRLVDVICASPGDQRGKSIVSLE: 818
                :************************     *********************************************************:
5z15_B_1     711:SEVSSLKHLDLSSNLLKTINKSALXXXXXTKLSMLELHGNPFECTCDIGDFRRWMDEHLNVKIPRLVDVICASPGDQRGKSIVSLE: 796
SecStr          :SS  S SEEE TTS      STT -----    EEE TT  EE SSS SHHHHHHHH  SS  TTGGG BEEESTTSTTSBTTS  :    
ExpBur          :eebebbeebbbbebebeebeeebe-----eebeebbbbebebebeeebeebbebbeeeeebebbebbebebbbeeebeeebbeebe:

Input Residue Numbers for Focused Sites

ex) 2,15,123