[pdbjlvh2]Protein Model on 4r08_A_1_X

Protein Model on 4r08_A_1_X_1 (TEMPLATE: 4r08 )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(TLR8_HUMAN)	A 1 (A)	polymer(polypeptide(L)) [743 aa]	Toll-like receptor 8 :TLR8_HUMAN
2	b		X 1 (B)	non-polymer(URI)	URIDINE	520V 543D 545D 573V 574T (identity: 100.0 %/94.4 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:4r08_A_1 identity=94.4%

queryA        32:RSYPCDEKKQNDSVIAECSNRRLQEVPQTVGKYVTELDLSDNFITHITNESFQGLQNLTKINLNHNPNVQHQNGNPGIQSNGLNITDGAFLNLKNLRELL: 131
                :**********   ********************************************************           ********************:
4r08_A_1      10:RSYPCDEKKQXXXVIAECSNRRLQEVPQTVGKYVTELDLSDNFITHITNESFQGLQNLTKINLNHNPNVXXXXXXXXXXXNGLNITDGAFLNLKNLRELL: 109
SecStr          :   SSEEE  --- EEE  SS  SS  S   TT SEEE TTS   EE TTTTTT TT SEEE  S S  -----------   EE TTTTTT TT  EEE:    
ExpBur          :eeebbeeeee---eebebeebebeebbeebbeebeebebbebebeebeeebbeebeebeebbbbebbee-----------eebebeebbbeebeebeebb:    

queryA       132:LEDNQLPQIPSGLPESLTELSLIQNNIYNITKEGISRLINLKNLYLAWNCYFNKVCEKTNIEDGVFETLTNLELLSLSFNSLSHVPPKLPSSLRKLFLSN: 231
                :****************************************************************************************************:
4r08_A_1     110:LEDNQLPQIPSGLPESLTELSLIQNNIYNITKEGISRLINLKNLYLAWNCYFNKVCEKTNIEDGVFETLTNLELLSLSFNSLSHVPPKLPSSLRKLFLSN: 209
SecStr          :  SS  SS  SS  TT SEEE TTS   EE HHHHTT TT SEEE  SSS TT      EE TTTTTT TT  EEE  SS  SS  S   TT SEEE TT:    
ExpBur          :bbebebeebbeebbeebbbbbbbbbebbebbeebbbebeebeebebbbbbeeeeeeeebeeeebbbeebeebebbbbbbbbbeebbeebbebbeebebbb:    

queryA       232:TQIKYISEEDFKGLINLTLLDLSGNCPRCFNAPFPCVPCDGGASINIDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNMPHLKVLDLEFNYLVGEIASGA: 331
                :****************************************************************************************************:
4r08_A_1     210:TQIKYISEEDFKGLINLTLLDLSGNCPRCFNAPFPCVPCDGGASINIDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNMPHLKVLDLEFNYLVGEIASGA: 309
SecStr          :S   EE TTTTTT TT  EEE TTSS   TT SS     GGG   EE TTTTTT TT  EEE TTS  S   GGGGTT TT  EEE TTS  HHHHHH G:    
ExpBur          :bebeebbeeebeebeebebbbbbbbbbbbeeeebeeeebeeeeebebeeebbeebeebeebbbbbbbbeebeeebbeebeebebbbbbebebbebbeebe:    

queryA       332:FLTMLPRLEILDLSFNYIKGSYPQHINISRNFSKLLSLRALHLRGYVFQELREDDFQPLMQLPNLSTINLGINFIKQIDFKLFQNFSNLEIIYLSENRIS: 431
                :****************************************************************************************************:
4r08_A_1     310:FLTMLPRLEILDLSFNYIKGSYPQHINISRNFSKLLSLRALHLRGYVFQELREDDFQPLMQLPNLSTINLGINFIKQIDFKLFQNFSNLEIIYLSENRIS: 409
SecStr          :GGGG TT  EEE TT   TT   SS    GGGGG TT  EEE TT   SEE GGGGGGGTT TT  EEE  SS   EE THHHHTSSS  EEE  SS   :    
ExpBur          :bbeebeebbebbbbebbeeeeeeeebebbeebeebeebebbbbebbbbeebeeebbebbbebeebebbbbbebebeebebebbeebeebebbbbbebebe:    

queryA       432:PLVKDTRQSYANSSSFQRHIRKRRSTDFEFDPHSNFYHFTRPLIKPQCAAYGKALDLSLNSIFFIGPNQFENLPDIACLNLSANSNAQVLSGTEFSAIPH: 531
                :*                         **************************************************************************:
4r08_A_1     410:PXXXXXXXXXXXXXXXXXXXXXXXXXDFEFDPHSNFYHFTRPLIKPQCAAYGKALDLSLNSIFFIGPNQFENLPDIACLNLSANSNAQVLSGTEFSAIPH: 509
SecStr          : -------------------------  SS TTS SSS  S SS HHHHTTS EEE TTS   S  TTTTTT     EEE TTS       S TTTTSTT:    
ExpBur          :e-------------------------eeebebeeebbeeeeebbeeebeeeeebbbbbebebeebbeebbeebbebbbbbbbebebebebebebbeebee:    
Contact         :                                                                                        b           

queryA       532:VKYLDLTNNRLDFDNASALTELSDLEVLDLSYNSHYFRIAGVTHHLEFIQNFTNLKVLNLSHNNIYTLTDKYNLESKSLVELVFSGNRLDILWNDDDNRY: 631
                :****************************************************************************************************:
4r08_A_1     510:VKYLDLTNNRLDFDNASALTELSDLEVLDLSYNSHYFRIAGVTHHLEFIQNFTNLKVLNLSHNNIYTLTDKYNLESKSLVELVFSGNRLDILWNDDDNRY: 609
SecStr          :  EEE TT       TTTTTT TT  EEE TT HHHHT TTS    GGGGG SS  EEE TTS     SS      SS  EEE TTS HHHHT TT  TT:    
ExpBur          :bebbbbbebebbbeeeebbebbeebbbbbbbebbeebeeeeeebbbbbbeebeebeebebbebebebbeeeeebebebbeebbbbbbbbeebbeeebeeb:    
Contact         :           b b                           bb                                                         

queryA       632:ISIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTELHINDNMLKFFNWTLLQQFPRLELLDLRGNKLLFLTDSLSDFTSSLRTLLLSHNRISHLPSGF: 731
                :****************************************************************************************************:
4r08_A_1     610:ISIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTELHINDNMLKFFNWTLLQQFPRLELLDLRGNKLLFLTDSLSDFTSSLRTLLLSHNRISHLPSGF: 709
SecStr          :TTTTTT TT  EEE  SS  S   HHHHTTS TT SEEE  SS  S   GGGGGG TT  EEE TTS      S GGGT S   EEE  SS      TT :    
ExpBur          :bebbebbeebeebbbbebebeebbeebbebbbebbeebbbbebebeebebebbeebeebebbbbeebebeebbebbeebbebbebbbbbebebeebbebb:    

queryA       732:LSEVSSLKHLDLSSNLLKTINKSALETKTTTKLSMLELHGNPFECTCDIGDFRRWMDEHLNVKIPRLVDVICASPGDQRGKSIVSLE: 818
                :**************************     ********************************************************:
4r08_A_1     710:LSEVSSLKHLDLSSNLLKTINKSALEXXXXXKLSMLELHGNPFECTCDIGDFRRWMDEHLNVKIPRLVDVICASPGDQRGKSIVSLE: 796
SecStr          :TTS TT  EEE  SS  S   GGGT -----   EEE TT  EE SGGGHHHHHHHHH TTSB   GGGSBEEESGGGTTSBTTS  :    
ExpBur          :beebeebeebbbbebebebbeeebee-----ebeebbbeebebebeeebbebeebbeeeeebebeebbbbebeeeeebeeebbbebe:

Protein Model on 4r08_A_1_X_1 (TEMPLATE: 4r08 )

Input Residue Numbers for Focused Sites