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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(TLR8_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [744 aa] | Toll-like receptor 8 :TLR8_HUMAN | |
2 | b | U 1 (B) | non-polymer(GD0) | 1-[2-(ethoxymethyl)-4-iodanyl-5-phenyl-imidazol-1-yl]-2-methyl-propan-2-ol | 261F 348Y 349I 350K 351G 352S 378V (identity: 100.0 %/94.3 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:7crf_A_1 identity=94.3% |
queryA 32:RSYPCDEKKQNDSVIAECSNRRLQEVPQTVGKYVTELDLSDNFITHITNESFQGLQNLTKINLNHNPNVQHQNGNPGIQSNGLNITDGAFLNLKNLRELL: 131 :******************************************************************** ********************: 7crf_A_1 10:RSYPCDEKKQNDSVIAECSNRRLQEVPQTVGKYVTELDLSDNFITHITNESFQGLQNLTKINLNHNPNXXXXXXXXXXXXNGLNITDGAFLNLKNLRELL: 109 SecStr : SSSEEEEETTEEEEE SS SS S TT SEEE SS EE TTTTTT TT SEEE S ------------ EE TTSSTT TT EEE: ExpBur :eeebbbeeeeeeeebbebeebebeebbeebeeebbebebbebebeebeeebbeebeebeebbbbebbe------------eebebeeebbeebeebeebb: queryA 132:LEDNQLPQIPSGLPESLTELSLIQNNIYNITKEGISRLINLKNLYLAWNCYFNKVCEKTNIEDGVFETLTNLELLSLSFNSLSHVPPKLPSSLRKLFLSN: 231 :****************************************************************************************************: 7crf_A_1 110:LEDNQLPQIPSGLPESLTELSLIQNNIYNITKEGISRLINLKNLYLAWNCYFNKVCEKTNIEDGVFETLTNLELLSLSFNSLSHVPPKLPSSLRKLFLSN: 209 SecStr : SS SS SS TT SEEE SS EE HHHHTT TT SEEE SSSSS SS SS EE TTTTTT TT EEE SS SS S TT SEEE TT: ExpBur :bbebebeebbbebbebbeebbbbebebbebbeebbbebeebebbbbbbbbbeeeebeebeeeebbbeebeebebbbbbbbbbeebbeebbebbeebebbb: queryA 232:TQIKYISEEDFKGLINLTLLDLSGNCPRCFNAPFPCVPCDGGASINIDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNMPHLKVLDLEFNYLVGEIASGA: 331 :****************************************************************************************************: 7crf_A_1 210:TQIKYISEEDFKGLINLTLLDLSGNCPRCFNAPFPCVPCDGGASINIDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNMPHLKVLDLEFNYLVGEIASGA: 309 SecStr :S EE TTTTSS TT EEE TTSS SS SS GGG EE TTTTTT TT EEE SS S GGGGTT TT EEE SS HHHHHS S: ExpBur :bebeebeeeebeebeebbbbbbbbbbbbeeeeebeeeebeeeeebebeeebbeebeebeebbbbbbbbeebebebbeebeebebbbbbbbebbebbbebe: Contact : b queryA 332:FLTMLPRLEILDLSFNYIKGSYPQHINISRNFSKLLSLRALHLRGYVFQELREDDFQPLMQLPNLSTINLGINFIKQIDFKLFQNFSNLEIIYLSENRIS: 431 :****************************************************************************************************: 7crf_A_1 310:FLTMLPRLEILDLSFNYIKGSYPQHINISRNFSKLLSLRALHLRGYVFQELREDDFQPLMQLPNLSTINLGINFIKQIDFKLFQNFSNLEIIYLSENRIS: 409 SecStr :GGGG TT EEE S TT SB GGGGG TT EEE TT SEE GGGGGGGSS TT EEE S EE GGGGSS SS EEE SS : ExpBur :bbeebeebeebbbbbbeeeeeeeeebebbeebeebeebebbbbbbbbbebbeeebbebbbebeebbbbbbbbbebeebebebbeebeebebbbbbebebe: Contact : bbbbb b queryA 432:PLVKDTRQSYANSSSFQRHIRKRRSTDFEFDPHSNFYHFTRPLIKPQCAAYGKALDLSLNSIFFIGPNQFENLPDIACLNLSANSNAQVLSGTEFSAIPH: 531 :***** ************************************************************************: 7crf_A_1 410:PLVKDXXXXXXXXXXXXXXXXXXXXXXXEFDPHSNFYHFTRPLIKPQCAAYGKALDLSLNSIFFIGPNQFENLPDIACLNLSANSNAQVLSGTEFSAIPH: 509 SecStr : ----------------------- TTS SSS S SS HHHHTTS EEE TTS SS TTTT S SEEE SS B S SSTTSTT: ExpBur :beeee-----------------------eeebeeebbbeeeebbeeebeeeeebbbbbebebeebbeebbeebbebbbbbbbebebebebebebbeebee: queryA 532:VKYLDLTNNRLDFDNASALTELSDLEVLDLSYNSHYFRIAGVTHHLEFIQNFTNLKVLNLSHNNIYTLTDKYNLESKSLVELVFSGNRLDILWNDDDNRY: 631 :****************************************************************************************************: 7crf_A_1 510:VKYLDLTNNRLDFDNASALTELSDLEVLDLSYNSHYFRIAGVTHHLEFIQNFTNLKVLNLSHNNIYTLTDKYNLESKSLVELVFSGNRLDILWNDDDNRY: 609 SecStr : EEE SS B TTTTTT TT EEE S GGGS TTS GGGGG SS EEE TT SS S EESS EEE TTS HHHHTT TT TT: ExpBur :bebbbbbebebbbeeeebbebbeebebbbbbebeeebeeeeeebbbbbbeebeebeebebbebbbeebeeeeebebebbeebbbbbbbbbebbeeeeeeb: queryA 632:ISIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTELHINDNMLKFFNWTLLQQFPRLELLDLRGNKLLFLTDSLSDFTSSLRTLLLSHNRISHLPSGF: 731 :****************************************************************************************************: 7crf_A_1 610:ISIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTELHINDNMLKFFNWTLLQQFPRLELLDLRGNKLLFLTDSLSDFTSSLRTLLLSHNRISHLPSGF: 709 SecStr :TTTTTEETT EEE SS S HHHHTTS TT SEEE SS S GGGGGG TT EEE SS S GGGT S EEE SS SSS: ExpBur :bebbebbeebeebbbbebebeebeeebbebbbebbbebbbbebebeebebebbeebeebebbbbebbebeebbeebeebbebbebbbbbebebeebbeeb: queryA 732:LSEVSSLKHLDLSSNLLKTINKSALETKTTTKLSMLELHGNPFECTCDIGDFRRWMDEHLNVKIPRLVDVICASPGDQRGKSIVSLELT: 820 :********************* **********************************************************: 7crf_A_1 710:LSEVSSLKHLDLSSNLLKTINXXXXXXXXXXKLSMLELHGNPFECTCDIGDFRRWMDEHLNVKIPRLVDVICASPGDQRGKSIVSLELT: 798 SecStr :SS TT EEE TTS S ---------- EEE TT EE SSTTHHHHHHHHH SSB GGG BEEESTTTTTSBTTS : ExpBur :beebebbebbbbbebebeebe----------ebeebbbbebebebeeebeebbebbeeeeebebbebbebebeeeeebeeebbeebeee: |