[pdbjlvh2]Protein Model on 6wml_A_1_Q

Protein Model on 6wml_A_1_Q_1 (TEMPLATE: 6wml )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(TLR8_HUMAN)	A 1 (A)	polymer(polypeptide(L)) [743 aa]	Toll-like receptor 8 :TLR8_HUMAN
2	b		Q 1 (A)	non-polymer(MAN)	alpha-D-mannopyranose	462D 464H (identity: 100.0 %/94.3 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:6wml_A_1 identity=94.3%

queryA        31:SRSYPCDEKKQNDSVIAECSNRRLQEVPQTVGKYVTELDLSDNFITHITNESFQGLQNLTKINLNHNPNVQHQNGNPGIQSNGLNITDGAFLNLKNLREL: 130
                :*********     ********************************************************            ******************:
6wml_A_1       9:SRSYPCDEKXXXXXVIAECSNRRLQEVPQTVGKYVTELDLSDNFITHITNESFQGLQNLTKINLNHNPNVXXXXXXXXXXXXGLNITDGAFLNLKNLREL: 108
SecStr          :    SSEE ----- EEE  SS  SS  S S TT SEEE TTS   EE TTTTSS TT  EEE  S S  ------------  EE TTTTTT TT  EE:    
ExpBur          :ebeebbeee-----eebebeebebeebbeebeeebeebebbebebeebeeebbeebeebebbebbebeee------------ebebeeebbeebeebbbb:    

queryA       131:LLEDNQLPQIPSGLPESLTELSLIQNNIYNITKEGISRLINLKNLYLAWNCYFNKVCEKTNIEDGVFETLTNLELLSLSFNSLSHVPPKLPSSLRKLFLS: 230
                :****************************************************************************************************:
6wml_A_1     109:LLEDNQLPQIPSGLPESLTELSLIQNNIYNITKEGISRLINLKNLYLAWNCYFNKVCEKTNIEDGVFETLTNLELLSLSFNSLSHVPPKLPSSLRKLFLS: 208
SecStr          :E  SS  SS  SS  TT SEEE  SS   EE HHHHTT TT  EEE  SSS TT      EE TTTTTT TT  EEE  SS  SS  SS  TT SEEE T:    
ExpBur          :ebbebebeebbeebbeebeebbbbbbebeebebebbbebbebbebebbbbbbeeeeeeebeeeebbbeebeebebbbbbbbbbeebbeebbeebbebebb:    

queryA       231:NTQIKYISEEDFKGLINLTLLDLSGNCPRCFNAPFPCVPCDGGASINIDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNMPHLKVLDLEFNYLVGEIASG: 330
                :****************************************************************************************************:
6wml_A_1     209:NTQIKYISEEDFKGLINLTLLDLSGNCPRCFNAPFPCVPCDGGASINIDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNMPHLKVLDLEFNYLVGEIASG: 308
SecStr          :TS   EE TTTTTT TT  EEE TTSS   TT SS     GGG   EE TTTTTT TT  EEE TTS  S   GGGGTT TT  EEE  SS  HHHHHH :    
ExpBur          :bbebeebbeeebeebeebebbbbbbbbbbbeeeebeeeeeeebeebebeeebbeebeebeebbbbbbbbeebeeebbeebeebbbbbbbebebbebbeeb:    

queryA       331:AFLTMLPRLEILDLSFNYIKGSYPQHINISRNFSKLLSLRALHLRGYVFQELREDDFQPLMQLPNLSTINLGINFIKQIDFKLFQNFSNLEIIYLSENRI: 430
                :****************************************************************************************************:
6wml_A_1     309:AFLTMLPRLEILDLSFNYIKGSYPQHINISRNFSKLLSLRALHLRGYVFQELREDDFQPLMQLPNLSTINLGINFIKQIDFKLFQNFSNLEIIYLSENRI: 408
SecStr          :GGGGG TT  EEE  S   TT   SB    GGGGG TT  EEE TT   SEE TGGGGGGTT TT  EEE  SS   EE GGGGGGSSS  EEE  SS  :    
ExpBur          :ebbeebeebbebbbbbbbeeeeeeeebebbeebeebeebebbbbebbbbeebeeebbebbbebeebebbbbbebebeebebbbbeebeebeebbbbebeb:    

queryA       431:SPLVKDTRQSYANSSSFQRHIRKRRSTDFEFDPHSNFYHFTRPLIKPQCAAYGKALDLSLNSIFFIGPNQFENLPDIACLNLSANSNAQVLSGTEFSAIP: 530
                :***                         ************************************************************************:
6wml_A_1     409:SPLXXXXXXXXXXXXXXXXXXXXXXXXXFEFDPHSNFYHFTRPLIKPQCAAYGKALDLSLNSIFFIGPNQFENLPDIACLNLSANSNAQVLSGTEFSAIP: 508
SecStr          :   -------------------------  S TTS SSS  S SS HHHHTTS EEE TTS   S  TTTTTT    SEEE TTS       S TTTTST:    
ExpBur          :eee-------------------------eebebeeebbeeeeeebeeebeeeeebbbbbebebeebbeebbbebbebbbbbbbebebebebeeebbeebe:    
Contact         :                               b b                                                                  

queryA       531:HVKYLDLTNNRLDFDNASALTELSDLEVLDLSYNSHYFRIAGVTHHLEFIQNFTNLKVLNLSHNNIYTLTDKYNLESKSLVELVFSGNRLDILWNDDDNR: 630
                :****************************************************************************************************:
6wml_A_1     509:HVKYLDLTNNRLDFDNASALTELSDLEVLDLSYNSHYFRIAGVTHHLEFIQNFTNLKVLNLSHNNIYTLTDKYNLESKSLVELVFSGNRLDILWNDDDNR: 608
SecStr          :T  EEE  SS      TTTTTT TT  EEE  S HHHHT TTS    GGGGG SS  EEE TTS     SS  S EESS  EEE  SS HHHHT TT  T:    
ExpBur          :ebebbbbbebebebeeeebbebbeebbbbbbbebeeebeeeeeebbbbbbeebeebeebebbebebebbbeeeebebebbeebbbbbbbbeebbeeebee:    

queryA       631:YISIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTELHINDNMLKFFNWTLLQQFPRLELLDLRGNKLLFLTDSLSDFTSSLRTLLLSHNRISHLPSG: 730
                :***************************************************************************** **********************:
6wml_A_1     609:YISIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTELHINDNMLKFFNWTLLQQFPRLELLDLRGNKLLFLTDSLXDFTSSLRTLLLSHNRISHLPSG: 708
SecStr          :TTTTTTEETT  EEE  SS  S   HHHHHTS TT SEEE  SS  S   GGGGGG TT  EEE  SS      S  -   S   EEE  SS      TT:    
ExpBur          :bbebbeebeebeebbbbebebeebbeebbebbbeebeebbbbebebeebbbebbeebeebebbbbeebebeebbeeb-ebbebbeebbbbebebeebbee:    

queryA       731:FLSEVSSLKHLDLSSNLLKTINKSALETKTTTKLSMLELHGNPFECTCDIGDFRRWMDEHLNVKIPRLVDVICASPGDQRGKSIVSLE: 818
                :**  ************************************************************************************:
6wml_A_1     709:FLXXVSSLKHLDLSSNLLKTINKSALETKTTTKLSMLELHGNPFECTCDIGDFRRWMDEHLNVKIPRLVDVICASPGDQRGKSIVSLE: 796
SecStr          :  --  S  EEE  SS      HHHH  SS     EEE TT  EE SSTTHHHHHHHHH TTSB   TTTSBEEESTTTTTSBTTS  :    
ExpBur          :bb--eeebbebbbbebebeebeeebbeeeeeeebeebbbbebebbbeeebeebbebbeeeeebebeebbbbebeeeeeeeebbbeebe:

Protein Model on 6wml_A_1_Q_1 (TEMPLATE: 6wml )

Input Residue Numbers for Focused Sites