Protein Model on 7rc9_A_1_P_1 (TEMPLATE: 7rc9 )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)		 type description a(query A)
1 a A(TLR8_HUMAN) A 1 (A) polymer(polypeptide(L)) [737 aa] Toll-like receptor 8 :TLR8_HUMAN
2 b P 1 (A) non-polymer(RQY) 2-(2,6-dimethylpyridin-4-yl)-5-(piperidin-4-yl)-3-(propan-2-yl)-1H-indole 261F 348Y 349I 350K 351G 352S 378V 403I 405F 427E (identity: 100.0 %/93.6 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:7rc9_A_1 identity=93.6%
queryA        32:RSYPCDEKKQNDSVIAECSNRRLQEVPQTVGKYVTELDLSDNFITHITNESFQGLQNLTKINLNHNPNVQHQNGNPGIQSNGLNITDGAFLNLKNLRELL: 131
                :********     *******************************************************             *******************:
7rc9_A_1      10:RSYPCDEKXXXXXVIAECSNRRLQEVPQTVGKYVTELDLSDNFITHITNESFQGLQNLTKINLNHNPNXXXXXXXXXXXXXGLNITDGAFLNLKNLRELL: 109
SecStr          :   SSEE ----- EEE  SS  SS  S S TT SEEE TTS   EE TTTTTT TT  EEE  S   -------------  EE TTSSTT TT  EEE:    
ExpBur          :eeebbeee-----eebbbeebebeebbeebeeebeebebbebebeebeeebbeebeebebbbbbebee-------------ebebeeebbeebeebeebb:    

queryA       132:LEDNQLPQIPSGLPESLTELSLIQNNIYNITKEGISRLINLKNLYLAWNCYFNKVCEKTNIEDGVFETLTNLELLSLSFNSLSHVPPKLPSSLRKLFLSN: 231
                :*****************************************************  *********************************************:
7rc9_A_1     110:LEDNQLPQIPSGLPESLTELSLIQNNIYNITKEGISRLINLKNLYLAWNCYFNXXCEKTNIEDGVFETLTNLELLSLSFNSLSHVPPKLPSSLRKLFLSN: 209
SecStr          :  SS  SS  SS  TT SEEE TTS   EE HHHHTT TT  EEE  SSSS  --    EE TTSSSS TT  EEE  SS   S  SS  TT SEEE TT:    
ExpBur          :bbebebeebbeebbebbebbbbbebebeebeeebbbebeebeebebbbbbbee--eeebeeeeebbeebeebebbbbbbbbbeebbeebbebbbebebbb:    

queryA       232:TQIKYISEEDFKGLINLTLLDLSGNCPRCFNAPFPCVPCDGGASINIDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNMPHLKVLDLEFNYLVGEIASGA: 331
                :****************************************************************************************************:
7rc9_A_1     210:TQIKYISEEDFKGLINLTLLDLSGNCPRCFNAPFPCVPCDGGASINIDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNMPHLKVLDLEFNYLVGEIASGA: 309
SecStr          :S   EE TTTTSS TT  EEE TTSS    S SS     TTS   EE TTTTTT  S  EEE  SS  S   GGGGTT TT  EEE  SS  HHHHHS G:    
ExpBur          :bebeebebeebeebeebebbbbbbbbbbeeeeebeeeebeeeeebebebebbeebeebeebbbbbbbbeebebebbeebeebbbbbbbbbebbebbeebe:    
Contact         :                             b                                                                      

queryA       332:FLTMLPRLEILDLSFNYIKGSYPQHINISRNFSKLLSLRALHLRGYVFQELREDDFQPLMQLPNLSTINLGINFIKQIDFKLFQNFSNLEIIYLSENRIS: 431
                :****************************************************************************************************:
7rc9_A_1     310:FLTMLPRLEILDLSFNYIKGSYPQHINISRNFSKLLSLRALHLRGYVFQELREDDFQPLMQLPNLSTINLGINFIKQIDFKLFQNFSNLEIIYLSENRIS: 409
SecStr          :GGGG SS  EEE  S   TT   SS    GGGGG TT  EEE TT   SEE TGGGTGGGG SS  EEE  SS  SEE GGGGGG SS  EEE  SS   :    
ExpBur          :bbeebeebeebbbbbbeeeeeeeeebebbeebeebeebebbbbbbbbbbbbeeebbebbbebeebebbbbbebebeebebbbbeebeebeebbbbebebe:    
Contact         :                bbbbb                         b                        b b                     b    

queryA       432:PLVKDTRQSYANSSSFQRHIRKRRSTDFEFDPHSNFYHFTRPLIKPQCAAYGKALDLSLNSIFFIGPNQFENLPDIACLNLSANSNAQVLSGTEFSAIPH: 531
                :****                         ***********************************************************************:
7rc9_A_1     410:PLVKXXXXXXXXXXXXXXXXXXXXXXXXXFDPHSNFYHFTRPLIKPQCAAYGKALDLSLNSIFFIGPNQFENLPDIACLNLSANSNAQVLSGTEFSAIPH: 509
SecStr          :    -------------------------  SSS SSS  S SS HHHHTTSEEEE  SSS SS  TTTTTT   EEEEE TTS    B  S TT S TT:    
ExpBur          :beee-------------------------eebeeeebbeeeeebeeebeeeeebbbbbebebeebbeebbeebbebbbbbbbebebbbebeeebbeebee:    

queryA       532:VKYLDLTNNRLDFDNASALTELSDLEVLDLSYNSHYFRIAGVTHHLEFIQNFTNLKVLNLSHNNIYTLTDKYNLESKSLVELVFSGNRLDILWNDDDNRY: 631
                :****************************************************************************************************:
7rc9_A_1     510:VKYLDLTNNRLDFDNASALTELSDLEVLDLSYNSHYFRIAGVTHHLEFIQNFTNLKVLNLSHNNIYTLTDKYNLESKSLVELVFSGNRLDILWNDDDNRY: 609
SecStr          : SEEE  SS  B  STTTTTT TT  EEE TT   SS  TTTSS  GGGGG SS  EEE TTS       SS    SS  EEE TTS HHHHHT TT TT:    
ExpBur          :bebbbbbebebbbbeeebbebbeebebbbbbebebeeeeeeebbbbebbeebeebbebbbbebebeebebeeebebebbeebbbbbbebeebbebeeeeb:    

queryA       632:ISIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTELHINDNMLKFFNWTLLQQFPRLELLDLRGNKLLFLTDSLSDFTSSLRTLLLSHNRISHLPSGF: 731
                :****************************************************************************************************:
7rc9_A_1     610:ISIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTELHINDNMLKFFNWTLLQQFPRLELLDLRGNKLLFLTDSLSDFTSSLRTLLLSHNRISHLPSGF: 709
SecStr          :TTTTTT TT  EEE TTS  S   HHHHHTS TT SEEE  SS  S   GGGGGG SS  EEE  SS      S GGGT SS  EEE  SS      TTS:    
ExpBur          :eebbeebeebeebbbbebebeebeeebbeebbebbbebbbbebebbebebebbeebeebebbbbeebebeebbeebeebbebbeebbbbebebeebbeeb:    

queryA       732:LSEVSSLKHLDLSSNLLKTINKSALETKTTTKLSMLELHGNPFECTCDIGDFRRWMDEHLNVKIPRLVDVICASPGDQRGKSIVSLE: 818
                :*************************     *********************************************************:
7rc9_A_1     710:LSEVSSLKHLDLSSNLLKTINKSALXXXXXTKLSMLELHGNPFECTCDIGDFRRWMDEHLNVKIPRLVDVICASPGDQRGKSIVSLE: 796
SecStr          :TTT SS  EEE  SS      TTT -----    EEE  S  EE SSTTHHHHHHHHH TTSB S GGG BEEESTTTTTSBGGG  :    
ExpBur          :bebbeebebbbbbebebeebeeebb-----eebeebbbbebebebeeebeebeebbeeeeebebeebbbbebeeeeeeeebbbbebe:

Input Residue Numbers for Focused Sites

ex) 2,15,123