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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(TLR8_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [733 aa] | Toll-like receptor 8 :TLR8_HUMAN | |
2 | b | O 1 (A) | non-polymer(I6A) | 5-methoxy-6-pyridin-4-yl-1~{H}-indole | 494F 495F 516S 518A 541R (identity: 100.0 %/93.0 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:7r52_A_1 identity=93.0% |
queryA 31:SRSYPCDEKKQNDSVIAECSNRRLQEVPQTVGKYVTELDLSDNFITHITNESFQGLQNLTKINLNHNPNVQHQNGNPGIQSNGLNITDGAFLNLKNLREL: 130 :********************************************************************* ******************: 7r52_A_1 5:SRSYPCDEKKQNDSVIAECSNRRLQEVPQTVGKYVTELDLSDNFITHITNESFQGLQNLTKINLNHNPNXXXXXXXXXXXXXGLNITDGAFLNLKNLREL: 104 SecStr : SSEEE GGGSEEEE SS SS TTS TTEEEEE SS EE TTSSTT TT EEE SS ------------- EE TTSSTT TT EE: ExpBur :eeeebbeeeeeeeebebbbeebebeeebeebbeebbebebbebebeebeeebbeebeebebbebbebee-------------ebebeebbbeebeebeeb: queryA 131:LLEDNQLPQIPSGLPESLTELSLIQNNIYNITKEGISRLINLKNLYLAWNCYFNKVCEKTNIEDGVFETLTNLELLSLSFNSLSHVPPKLPSSLRKLFLS: 230 :**************************************************** ********************************************: 7r52_A_1 105:LLEDNQLPQIPSGLPESLTELSLIQNNIYNITKEGISRLINLKNLYLAWNCYXXXXCEKTNIEDGVFETLTNLELLSLSFNSLSHVPPKLPSSLRKLFLS: 204 SecStr :E SS SS SS TT EEE SS EE HHHHTT TT EEE SS ---- EE TTTTTT TT EEE SS SS SS TT EEE T: ExpBur :bbbebebeebbbebbebbbebbbbebebeebebebbbebeebebbebbebbe----eeebeeeeebbeebeebebbbbbbbbbeebbeebbeebbebebb: queryA 231:NTQIKYISEEDFKGLINLTLLDLSGNCPRCFNAPFPCVPCDGGASINIDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNMPHLKVLDLEFNYLVGEIASG: 330 :****************************************************************************************************: 7r52_A_1 205:NTQIKYISEEDFKGLINLTLLDLSGNCPRCFNAPFPCVPCDGGASINIDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNMPHLKVLDLEFNYLVGEIASG: 304 SecStr :TS EE TTTTTT TT EEE TTSS SS SS TTS EE TTSSTT TT EEE SS S GGGGTT TT EEE SS HHHHHS : ExpBur :bbebeebebeebeebeebebbbbbbbbbbeeeeebeeeebeeeeebebeeebbeebeebeebbbbbbbbeebeeebbeebeebebbbbbbbebbebbeeb: queryA 331:AFLTMLPRLEILDLSFNYIKGSYPQHINISRNFSKLLSLRALHLRGYVFQELREDDFQPLMQLPNLSTINLGINFIKQIDFKLFQNFSNLEIIYLSENRI: 430 :****************************************************************************************************: 7r52_A_1 305:AFLTMLPRLEILDLSFNYIKGSYPQHINISRNFSKLLSLRALHLRGYVFQELREDDFQPLMQLPNLSTINLGINFIKQIDFKLFQNFSNLEIIYLSENRI: 404 SecStr :SGGGG TT EEE S TT SB GGGGG TT EEE TT SEE TGGGTTTTT SS EEE S SEE GGGGTT SS EEE SS : ExpBur :ebbeebeebeebbbbbbeeeeeeeeebebbeebebbeebebbbbbbbbbbebeeebbebbbebeebebbbbbebebeebebebbeebeebeebbbbebbb: queryA 431:SPLVKDTRQSYANSSSFQRHIRKRRSTDFEFDPHSNFYHFTRPLIKPQCAAYGKALDLSLNSIFFIGPNQFENLPDIACLNLSANSNAQVLSGTEFSAIP: 530 :*** *********************************************************************: 7r52_A_1 405:SPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXDPHSNFYHFTRPLIKPQCAAYGKALDLSLNSIFFIGPNQFENLPDIACLNLSANSNAQVLSGTEFSAIP: 504 SecStr : ---------------------------- TTS SSS S SS HHHHTTSEEEE SS SS TTSSTT EEEEE SS B S TTSSST: ExpBur :ebe----------------------------eeeeeebbeeeeebeeebeeeeebbbbbebebeebbeebbeebbebbbbbbbebebebebebebbeebe: Contact : bb b b queryA 531:HVKYLDLTNNRLDFDNASALTELSDLEVLDLSYNSHYFRIAGVTHHLEFIQNFTNLKVLNLSHNNIYTLTDKYNLESKSLVELVFSGNRLDILWNDDDNR: 630 :************************************ ********************************************************: 7r52_A_1 505:HVKYLDLTNNRLDFDNASALTELSDLEVLDLSYNSHXXXXXXXXHHLEFIQNFTNLKVLNLSHNNIYTLTDKYNLESKSLVELVFSGNRLDILWNDDDNR: 604 SecStr :T SEEE SS B STTTTTT TT EEE TT -------- GGGGG SS EEE TT S S SS EEE TTS HHHHS SS T: ExpBur :ebebbbbbebebebeeeebbbbbeebbbbbbbebee--------ebbebbeebeebeebebbebebeebeebeebebebbeebbbbbbbbeebbeeebee: Contact : b queryA 631:YISIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTELHINDNMLKFFNWTLLQQFPRLELLDLRGNKLLFLTDSLSDFTSSLRTLLLSHNRISHLPSG: 730 :****************************************************************************************************: 7r52_A_1 605:YISIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTELHINDNMLKFFNWTLLQQFPRLELLDLRGNKLLFLTDSLSDFTSSLRTLLLSHNRISHLPSG: 704 SecStr :TTTTTTT TT EEE TTS S HHHHHTS TT SEEE SS S GGGGGG TT EEE SS TTHHHH S EEE SS TT: ExpBur :beebbeebeebeebbbbebebeebeeebbebbbeebeebbbbebebeebebebbeebeebebbbbeebebeeebeebeeebebbebbbbbebebeebbee: queryA 731:FLSEVSSLKHLDLSSNLLKTINKSALETKTTTKLSMLELHGNPFECTCDIGDFRRWMDEHLNVKIPRLVDVICASPGDQRGKSIVSLE: 818 :** ************************************************************************************: 7r52_A_1 705:FLXXVSSLKHLDLSSNLLKTINKSALETKTTTKLSMLELHGNPFECTCDIGDFRRWMDEHLNVKIPRLVDVICASPGDQRGKSIVSLE: 792 SecStr : -- S EEE TTS TTTS S EEE TT EE SGGGHHHHHHHHH TTSB GGG BEEE TTTTTSBTTS : ExpBur :bb--eeebebbbbbebebeebeeebbeeeeebebeebbbeebebebeeebeebbbbbeeeeebebebbbebebeeeeeeeebbbbeee: |