Protein Model on 6kya_A_1_N_1
(TEMPLATE: 
6kya
)Protein Model on 6kya_A_1_N_1
(TEMPLATE: 6kya
)| CurrentView:HTML5 Change to:[JAVA] |
DOWNLOAD: [sequence-replaced 3D model]
[for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(TLR8_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [743 aa] | Toll-like receptor 8 :TLR8_HUMAN | |
| 2 | b | N 1 (B) | non-polymer(DY3) | 3-[5-methylsulfanyl-4-(3,4,5-trimethylphenyl)-1,2,4-triazol-3-yl]propan-1-ol | 494F 495F 516S 518A 519Q 520V 567Y (identity: 100.0 %/94.4 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:6kya_A_1 identity=94.4% |
queryA 32:RSYPCDEKKQNDSVIAECSNRRLQEVPQTVGKYVTELDLSDNFITHITNESFQGLQNLTKINLNHNPNVQHQNGNPGIQSNGLNITDGAFLNLKNLRELL: 131
:********************************************************************* ********************:
6kya_A_1 10:RSYPCDEKKQNDSVIAECSNRRLQEVPQTVGKYVTELDLSDNFITHITNESFQGLQNLTKINLNHNPNVXXXXXXXXXXXNGLNITDGAFLNLKNLRELL: 109
SecStr : SSEEEE SSSEEEE TTS SS S TTEEEEE SS EE TTTTTT TT EEE TT S ----------- EE TTTTTT TT EEE:
ExpBur :eeebbbeeeeeeeebbebeebebeebbeebeeebeebebbebebeebeeebbeebeebeebbbbebeee-----------eebebeebbbeebeebeebb:
queryA 132:LEDNQLPQIPSGLPESLTELSLIQNNIYNITKEGISRLINLKNLYLAWNCYFNKVCEKTNIEDGVFETLTNLELLSLSFNSLSHVPPKLPSSLRKLFLSN: 231
:****************************************************************************************************:
6kya_A_1 110:LEDNQLPQIPSGLPESLTELSLIQNNIYNITKEGISRLINLKNLYLAWNCYFNKVCEKTNIEDGVFETLTNLELLSLSFNSLSHVPPKLPSSLRKLFLSN: 209
SecStr : SS SS SS TT SEEE SS EE TTTSTT TT SEEE TTTT SSSS SS EE TTTTTT TT EEE SS SS S TT SEEE S:
ExpBur :bbebebeebbbebbebbeebbbbbbbbbebeeebbbebeebeebbbbbbbeeeeebeebebeebbbeebeebebbbbbbbbbeebbeebbebbeebebbe:
queryA 232:TQIKYISEEDFKGLINLTLLDLSGNCPRCFNAPFPCVPCDGGASINIDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNMPHLKVLDLEFNYLVGEIASGA: 331
:****************************************************************************************************:
6kya_A_1 210:TQIKYISEEDFKGLINLTLLDLSGNCPRCFNAPFPCVPCDGGASINIDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNMPHLKVLDLEFNYLVGEIASGA: 309
SecStr :S EE TTTSTT TT EEE TTSS TT SS STT EE TTTTTT TT EEE SS S GGGGTT TT EEE SS HHHHHS G:
ExpBur :bebeebbeebbeebeebbbbbbbbbbbbeeeeeeeeeebeeeeebebeeebbeebeebeebbbbbbbbeebeebbbeebeebebbbbbebebbebbeebe:
queryA 332:FLTMLPRLEILDLSFNYIKGSYPQHINISRNFSKLLSLRALHLRGYVFQELREDDFQPLMQLPNLSTINLGINFIKQIDFKLFQNFSNLEIIYLSENRIS: 431
:****************************************************************************************************:
6kya_A_1 310:FLTMLPRLEILDLSFNYIKGSYPQHINISRNFSKLLSLRALHLRGYVFQELREDDFQPLMQLPNLSTINLGINFIKQIDFKLFQNFSNLEIIYLSENRIS: 409
SecStr :GGGG TT EEE S TT SB GGGGG TT EEE TT SEE GGGGGGGGG TT EEE S SEE GGGGGG SS EEE SS :
ExpBur :bbeebeebeebbbbbbeeeeeeeeebebbeebeebeebebbbbbbbbbbebeeebbebbbebeebbbbbbbbbebeebebebbeebeebebbbbbebebe:
queryA 432:PLVKDTRQSYANSSSFQRHIRKRRSTDFEFDPHSNFYHFTRPLIKPQCAAYGKALDLSLNSIFFIGPNQFENLPDIACLNLSANSNAQVLSGTEFSAIPH: 531
:*** ***********************************************************************:
6kya_A_1 410:PLVXXXXXXXXXXXXXXXXXXXXXXXXXXFDPHSNFYHFTRPLIKPQCAAYGKALDLSLNSIFFIGPNQFENLPDIACLNLSANSNAQVLSGTEFSAIPH: 509
SecStr : -------------------------- TTS SSS S SS HHHHTTS EEE TTS SS TTSSTT SEEE SS B S TTTTSTT:
ExpBur :bee--------------------------eeeeeeebbeeeebbeeebeeeeebbbbbebebeebbeebbeebbebbbbbbbebebebebebebbeebee:
Contact : bb b bbb
queryA 532:VKYLDLTNNRLDFDNASALTELSDLEVLDLSYNSHYFRIAGVTHHLEFIQNFTNLKVLNLSHNNIYTLTDKYNLESKSLVELVFSGNRLDILWNDDDNRY: 631
:****************************************************************************************************:
6kya_A_1 510:VKYLDLTNNRLDFDNASALTELSDLEVLDLSYNSHYFRIAGVTHHLEFIQNFTNLKVLNLSHNNIYTLTDKYNLESKSLVELVFSGNRLDILWNDDDNRY: 609
SecStr : EEE S B STTTTTT TT EEE TT TT S B GGGGG SS EEE TT BSS EESS EEE SS HHHHHT TT TT:
ExpBur :bebbbbbebebebeeeebbbbbeebbbbbbbebeeeeeeeeeebbbebbeebeebeebebbebebebbeeeeebebebbeebbbbbbbbbebbebeeeeb:
Contact : b
queryA 632:ISIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTELHINDNMLKFFNWTLLQQFPRLELLDLRGNKLLFLTDSLSDFTSSLRTLLLSHNRISHLPSGF: 731
:****************************************************************************************************:
6kya_A_1 610:ISIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTELHINDNMLKFFNWTLLQQFPRLELLDLRGNKLLFLTDSLSDFTSSLRTLLLSHNRISHLPSGF: 709
SecStr :TTTTTEETT EEE SS S HHHHHTS TT SEEE SS S GGGGGG TT EEE SS S GGGT SS EEE SS TT :
ExpBur :bebbebbeebeebbbbebebeebbeebbebbbebbbebbbbebebeebebebbeebeebeebbbeebebeebbebbbebbebbebbbbbebebeebbeeb:
queryA 732:LSEVSSLKHLDLSSNLLKTINKSALETKTTTKLSMLELHGNPFECTCDIGDFRRWMDEHLNVKIPRLVDVICASPGDQRGKSIVSLE: 818
:*********************** *********************************************************:
6kya_A_1 710:LSEVSSLKHLDLSSNLLKTINKSXXXXXXXTKLSMLELHGNPFECTCDIGDFRRWMDEHLNVKIPRLVDVICASPGDQRGKSIVSLE: 796
SecStr :S S EEE SS ------- EEE TT EE SGGGHHHHHHHHT TTSB TTGGG BEEESTTTTTSBTTT :
ExpBur :eeeebebeebbbbebebeebeee-------eebeebbbbebebebeeebeebeeebeeeeebebbebbebebeeeeebeeebbbebe:
|
[assembly_id:1]
[help]