[pdbjlvh2]Protein Model on 5ijb_A_1_M

Protein Model on 5ijb_A_1_M_1 (TEMPLATE: 5ijb )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(TLR8_HUMAN)	A 1 (A)	polymer(polypeptide(L)) [593 aa]	Toll-like receptor 4, Variable lymphocyte receptor B chimera :TLR4_MOUSE:Q4G1L2_EPTBU
2	b		M 1 (A)	non-polymer(NAG)	2-acetamido-2-deoxy-beta-D-glucopyranose	661N (identity: 100.0 %/29.1 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:5ijb_A_1 identity=29.1%

queryA       259:RCFNAPFPCVPCDGGASI-NID----------RFAFQNLTQLRYLNLSSTSLRKINAAWFKNMPHLKVLDLEFNYLVGEIASGAF--LTMLPRLEILDLS: 345
                : *       ** *   *  ***             * *   *  * **      *         **  * *  *        * *  ** *  *      :
5ijb_A_1      13:QCMDQKLSKVPDDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP-IQSFSPGSFSGLTSLENLVAVETK: 111
SecStr          :E TT   SS  SSS SS SEEE TTS   SB TTTTSS    SEEE TT     B TTTTTT TT  EEE TT  -     TTSSTT SS  EEE TTS :    
ExpBur          :ebeeeebeeebeebeeebebbbbbebebeebeeeebeebeebeebbbbebebeebeeebbebbeebbebbbebbe-beebeebbbeebeebeebbbbebe:    

queryA       346:FNYIKGSYP-------QHINISRNF----------SKLLSLRALHLRGYVFQELREDDFQPLMQLPNLS-TINLGINFIKQIDFKLFQNFSNLEIIYLSE: 427
                :      * *          *   **          * *  *    *     *     * * *   *          * *  *    **     *      :
5ijb_A_1     112:LASLE-SFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGN: 210
SecStr          :   ST-T   TT TT  EEE  SS        GGGGG TT  EEE  SS   EE TTTTHHHHH SS   EEE TT    EE TTTTTTEEEEEEEEES :    
ExpBur          :beebe-ebbbeebeebeebebbebebeebbbbebbeebeebeebbbbebebeebeeebbebbeeeeeeebbbbbbebebeebeeebbeebebebbbbebb:    

queryA       428:NRISPLVKDTRQSYA----------------NSSSFQRHIRKRRSTDFEFDPHSNFY--HFTRPLIKPQCAAYGKALDLSLNSIFFIG--PNQFE-----: 502
                :   *   *   *  *                *   *   *      *   *     *   *     *  * *   *  *   **      *  *      :
5ijb_A_1     211:FNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGL-CDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLS: 309
SecStr          : SSHHHHHHHHHHT SEEEEEEEEE  TTS   S   GGGGTTT-TTSEEEEEEE   SS  GGGTT GGGGG S  EEES          TT   SEEE:    
ExpBur          :beebeebeebbebbeebebeebbbbbeeeeeebeebebebbebb-eebebeebebbebeebeeebbebebbbebebbbbeebbbeebeebeeebebeebb:    

queryA       503:------------NLPDIACLNLSANSNAQVLSGTEFSAIPHVKYLDLTNNRLDFDNASALTELS--DLEVLDLSYNSHYFRIAGVTHHLEFIQNFTNLKV: 588
                :             **    * *  *            * *   ****  * * *        *    *  **** *      *              *  :
5ijb_A_1     310:IIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKV---ALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSAN-------FMGLEELQH: 399
SecStr          :EES   SS      TT  EEEEES SS  B    ---  TT  EEE TTS  BEEEE  GGGT  S   EEE  S SEEEE S ------- TT TT  E:    
ExpBur          :beebebeebbebebeebeebbbbebeeebebeeb---ebeebbebbbbebebebeebbbeebbbbeebeebbbbebeebebeee-------beebeebee:    

queryA       589:LNLSHNNIYTLTDKYNLESKSLVELVFSGNRLDILWNDDDNRYISIFKGLKNLTRLDLSLNRLK-HIPNEAFLNLPASLTELHINDNMLKFFNWTLLQQF: 687
                :*   *      *        **  *      ***           ** **  *  *    *  *       * *    ** *      *    *      :
5ijb_A_1     400:LDFQHSTLKRVTEFSAF--LSLEKLLY----LDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFAN-TTNLTFLDLSKCQLEQISWGVFDTL: 492
SecStr          :EE TT EEESTTTS TT--TT TT  E----EE TTS  EE  GGGGTT TT  EEE TT EEGGGEE STTTT- TT  EEE  SS   EE TTTTTT :    
ExpBur          :bbbeebebeebeeebbb--ebbeebee----bbbbebebebeeebbbebbeebebbebbebbbeeebbbebbee-beebbebbbbebebeebeebbbeeb:    
Contact         :                                                                         b                          

queryA       688:PRLELLDLRGNKLLFLTDSLSDFTSSLRTLLLSHNRISHLPSGFLSEVSSLKHLDLSSNLLKTINKSALETKTTTKLSMLELHGNPFECTCDIGDF-RRW: 786
                : ** **    * ****  *      **  * *  *     * *      **                              ** **  * *   *   **:
5ijb_A_1     493:HRLQLLNMSHNNLLFLDSSHYNQLYSLKELALDTNQLKSVPDGIFDRLTSLQK--------------------------IWLHTNPWDCSCPRIDYLSRW: 566
SecStr          :TT  EEE  SS      GGGTTT TT  EEE  SS      TTTTTT TT  E--------------------------EE  SS B   TTTTHHHHHH:    
ExpBur          :eebebbebbebebeebeebbbeebeebeebbbbebebeebeeebbeebeebee--------------------------bebeebebebeeeebebbbeb:    

queryA       787:MDE: 789
                :   :
5ijb_A_1     567:LNK: 569
SecStr          :HHH:    
ExpBur          :bee:

Protein Model on 5ijb_A_1_M_1 (TEMPLATE: 5ijb )

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