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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(TLR8_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [737 aa] | Toll-like receptor 8 :TLR8_HUMAN | |
2 | b | K 1 (A) | non-polymer(NAG) | 2-acetamido-2-deoxy-beta-D-glucopyranose | 367L 368S 370R 394P 395N (identity: 100.0 %/93.5 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:7r53_A_1 identity=93.5% |
queryA 31:SRSYPCDEKKQNDSVIAECSNRRLQEVPQTVGKYVTELDLSDNFITHITNESFQGLQNLTKINLNHNPNVQHQNGNPGIQSNGLNITDGAFLNLKNLREL: 130 :********************************************************************** ******************: 7r53_A_1 5:SRSYPCDEKKQNDSVIAECSNRRLQEVPQTVGKYVTELDLSDNFITHITNESFQGLQNLTKINLNHNPNVXXXXXXXXXXXXGLNITDGAFLNLKNLREL: 104 SecStr : SSEEEE SSSEEEE SS SS S S TT SEEE SS EE TTSS S TT EEE SSS ------------ EE TTTTSS TT EE: ExpBur :ebeebbeeeeeeeeeebbbeebebeebbeebeeebbebebbebebeebeeebbeebeebeebbbbebeee------------ebebeeebbeebeebeeb: queryA 131:LLEDNQLPQIPSGLPESLTELSLIQNNIYNITKEGISRLINLKNLYLAWNCYFNKVCEKTNIEDGVFETLTNLELLSLSFNSLSHVPPKLPSSLRKLFLS: 230 :************************************************** *******************************************: 7r53_A_1 105:LLEDNQLPQIPSGLPESLTELSLIQNNIYNITKEGISRLINLKNLYLAWNXXXXXXXEKTNIEDGVFETLTNLELLSLSFNSLSHVPPKLPSSLRKLFLS: 204 SecStr :E SS SS SS TT SEEE SS EE TTTSTT TT SEEE ------- EE TTSGGG TT EEE SS S SS TT EEE T: ExpBur :bbbebebeebbeebbebbbebbbbebebeebeeebbbebeebebbebbeb-------eebeebebbbeebeebebbbbbbbebeebbeebbeebeebebb: queryA 231:NTQIKYISEEDFKGLINLTLLDLSGNCPRCFNAPFPCVPCDGGASINIDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNMPHLKVLDLEFNYLVGEIASG: 330 :****************************************************************************************************: 7r53_A_1 205:NTQIKYISEEDFKGLINLTLLDLSGNCPRCFNAPFPCVPCDGGASINIDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNMPHLKVLDLEFNYLVGEIASG: 304 SecStr :TS EE GGGSSS TT EEE TTSS SS SS SSS EE TTTTTT TT EEE SS S GGGGTT TT EEE SS HHHHHH : ExpBur :bbebeebeeeebeebeebbbbbbbbbbbbeeeeebeeeebeeeeebebeeebbeebeebeebbbbbbbbeebebbbbeebeebebbbbbbbebeebbeeb: queryA 331:AFLTMLPRLEILDLSFNYIKGSYPQHINISRNFSKLLSLRALHLRGYVFQELREDDFQPLMQLPNLSTINLGINFIKQIDFKLFQNFSNLEIIYLSENRI: 430 :****************************************************************************************************: 7r53_A_1 305:AFLTMLPRLEILDLSFNYIKGSYPQHINISRNFSKLLSLRALHLRGYVFQELREDDFQPLMQLPNLSTINLGINFIKQIDFKLFQNFSNLEIIYLSENRI: 404 SecStr :GGGGG TT EEE S TT SS GGGGG TT EEE TT SEE GGGGGGGTT SS EEE S SEE GGGGGT TT EEE SS : ExpBur :ebbeebeebeebbbbbbeeeeeeeeebebbeebebbeebebbbbbbbbbbebeeebbebbbebeebebbbbbbbebeebebbbbeebeebeebbbbebbb: Contact : bb b bb queryA 431:SPLVKDTRQSYANSSSFQRHIRKRRSTDFEFDPHSNFYHFTRPLIKPQCAAYGKALDLSLNSIFFIGPNQFENLPDIACLNLSANSNAQVLSGTEFSAIP: 530 :*** *********************************************************************: 7r53_A_1 405:SPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXDPHSNFYHFTRPLIKPQCAAYGKALDLSLNSIFFIGPNQFENLPDIACLNLSANSNAQVLSGTEFSAIP: 504 SecStr : ---------------------------- TTS SSS S SS HHHHTTSEEEE TTSS SS TTSSTT EEEEE TTS B S TTSSST: ExpBur :ebe----------------------------eeeeeebbeebebbeeebbeeeebbbbbebebeebbeebbeebbebbbbbbbebebbbebebebbeebe: queryA 531:HVKYLDLTNNRLDFDNASALTELSDLEVLDLSYNSHYFRIAGVTHHLEFIQNFTNLKVLNLSHNNIYTLTDKYNLESKSLVELVFSGNRLDILWNDDDNR: 630 :********************************************************************** **************************: 7r53_A_1 505:HVKYLDLTNNRLDFDNASALTELSDLEVLDLSYNSHYFRIAGVTHHLEFIQNFTNLKVLNLSHNNIYTLTXXXXLESKSLVELVFSGNRLDILWNDDDNR: 604 SecStr :T SEEE SS B STTTTTT TT EEE TT SS TTTSS GGGGG SS EEE TTS ---- B SS EEE TTS HHHHS SS T: ExpBur :ebebbbbbebebbbbeeebbbbbeebbbbbbbebebeeeeeeebbebebbeebeebeebebbebebeebe----bebebbeebbbbebbbeebbeeeeee: queryA 631:YISIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTELHINDNMLKFFNWTLLQQFPRLELLDLRGNKLLFLTDSLSDFTSSLRTLLLSHNRISHLPSG: 730 :****************************************************************************************************: 7r53_A_1 605:YISIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTELHINDNMLKFFNWTLLQQFPRLELLDLRGNKLLFLTDSLSDFTSSLRTLLLSHNRISHLPSG: 704 SecStr :TTTSSTB TT EEE SS S HHHHHTS TT SEEE SS S GGGGGG TT EEE SS S GGGT S EEE SS TT: ExpBur :bbebbeebeebeebbbbebebeebeeebbebbbebbeebbbbebebeebebebbeebeebebbbbeebebeebbeebeebbebbbebbbbebebeebbeb: queryA 731:FLSEVSSLKHLDLSSNLLKTINKSALETKTTTKLSMLELHGNPFECTCDIGDFRRWMDEHLNVKIPRLVDVICASPGDQRGKSIVSLE: 818 :****************************************************************************************: 7r53_A_1 705:FLSEVSSLKHLDLSSNLLKTINKSALETKTTTKLSMLELHGNPFECTCDIGDFRRWMDEHLNVKIPRLVDVICASPGDQRGKSIVSLE: 792 SecStr :HHHH TT EEE TTS TTTT SS EEE TT EE SGGGHHHHHHHHH TTSB GGG BEEESTTTBTSBGGG : ExpBur :bbbebeebbbbbbbebebeebeeebbeeeeeeebeebbbbebebebeeebeebbebbeebeebebeebbebebeeeeebeeebbbeee: |