Protein Model on 8suf_A_1_J_1 (TEMPLATE: 8suf )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)		 type description a(query A)
1 a A(TLR8_HUMAN) A 1 (A) polymer(polypeptide(L)) [939 aa] TIR domain-containing protein :Q9N5Z3_CAEEL
2 b J 1 (J) branched(oligosaccharide) 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose 427E(Y) 464H 490L(S) 514A(N) (identity: 25.0 %/26.5 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:8suf_A_1 identity=26.5%
queryA       285:NLTQLRYLNLSSTSLRKINAAWFKNMPHLKVLDLEFNYLVGEIASGAFLTMLPRLEILDLSFNYIK-------GSYPQHINISRN-FSKLLSLRA----L: 372
                : *  *  ** **  *             *   **  * *        **   *         * *            *      *    * **       :
8suf_A_1     175:SLPHLQVLNISSNELPSLRREESCVAQQLLIVDLSRNRLTN---IEQFLRGIPAIRQISVAYNSIAELDLSLATPFLQQLDAEANRIVDLTSLPGTVVHV: 271
SecStr          :H TT  EEE  S   S     TT   TT  EEE  SS  S --- HHHHTT     EEE  SS     B TTT TT  EEE  SS  SS  B  TT  EE:    
ExpBur          :bbeebebbebbebebeebebeeebebeebeebbbbebebee---beebbeebeebeebbbbebebeebebeebbeebeebebeebebeebeebbeebeeb:    

queryA       373:HLRGYVFQELREDDFQPLMQLPNLSTINLGINFIKQIDFKLFQNFSNLEIIYLSENRISPLVKDTRQSYANSSSFQRHIRKRRSTDFEFDPHSNFYHFTR: 472
                : * *                *  *   *   * *       *     **    * *    *     *               *        *      * :
8suf_A_1     272:NLAGNALKRVPD----AVAELASLVALNVSRNEIEAGNSSVFSS-PELEMLDASYNKLDSLPVEWLQKC-----------EKRIAHLHLE-HNSIEQLTG: 354
SecStr          :E TTS  SS  H----HHHT SS  EEE  SS   SSS      -S   EEE  SS  SS  TTTGGG -----------TTT  EEE  -SS      T:    
ExpBur          :bbbebebeebbe----bbbebeebebbebbebebebeeebebeb-eebeebbbbebebeebbeebbeeb-----------eeebbebbbb-ebebeebee:    
Contact         :                                                      b                                    b        

queryA       473:PLIKPQCAAYGKALDLSLNSIFFIGPNQFENLPDIACLNLSANSNAQVLSGTEFSAIPHVKYLDLTNNRLDFDNASALTELSDLEVLDLSYNSHYFRIAG: 572
                :       *     **** *               *  * ** **    *     *       ***  * *      *      *   *** *    *** :
8suf_A_1     355:GVLAN--ATNLQTLDLSSNQLRVFRDEVLPENSKIGNLRLSNNS-LELLEPSSLSGL-KLESLDLSHNKLT-EVPAAIGKVEQLKKVDLSHN----RIAK: 445
SecStr          :TSSTT-- SS  EEE  SS  SEE STTS TT    EEE  SS -  EE TTTTTT -  SEEE  SS  S-S  GGGGS S   EEE TTS----    :    
ExpBur          :ebbee--beebebbbbbbbebebbeeebbbeebebbebebbebe-beebeeebbeeb-ebeebebbebebe-ebbebbeebeebeebebbeb----ebee:    
Contact         :                 b                       b                                                          

queryA       573:VTHHLEFIQNFTNLKVLNLSHNNIYTLTDKYNLESKSLVELVFSGNRLDILWNDDDNRYISIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTELHIN: 672
                :*            *    ** *            *  *  *  * *    *  *        *     *       *  *       *     *  *   :
8suf_A_1     446:VYQYV--LNKIKQLHTVDLSNNQLQSIGPYIFSDSSELHSLDVSNNEISLLFKD-------AFARCPKLRKISMKMNKIKSL--DEGLTEASGLRRLDVS: 534
SecStr          :  TTT--TTS SS  EEE TTS    B TTSSSS TT  EEE  SS    B TT-------TT S TT  EEE  SS     --TTTTSS TT  EEE  :    
ExpBur          :beeeb--bbebeebeebebbebebeebeeebbbebeebeebbbbebebeebeee-------bbeebeebeebbbeebebeeb--eebbeebebbeebbbb:    

queryA       673:DNMLKFFNWTLLQQFPRLELLDLRGNKLLFLTD-SLSDFTS----------------------SLRTLLLSHNRISHLPSGFLSEVSSLKHLDLSSNLLK: 749
                : *      *  *     ** *    *    **  * *  *                       **  *  * **   *    *   * *  * *  *** :
8suf_A_1     535:HNEILVLKWSALPE--NLEILNADNNDINLLTAASMSPSTANLKSVSLSNNGITIMNADQIPNSLESLDVSNNRLAKLGKTALAAKSQLRRLNLKGNLLT: 632
SecStr          :SS   SB STTS S--S  EEE  SS    B  SSS STTTT  EEE  SS      TTTS TT SEEE TTS      TTTTTS TT  EEE TT   S:    
ExpBur          :ebebeebebebbbe--ebeebebbebebeebeebeebebbeebeebbbbebbbeebeeebbbebbeebebbebebeebbeebbbebeebeebbbeebebe:    

queryA       750:TINKSALETKTTTKLSMLELHGNPFECTCDIGDFRRWM: 787
                :                  *   **  * *  *    **:
8suf_A_1     633:VVATESMKVVEAVHPLKVEISENPLICDCQMG----WM: 666
SecStr          :   GGGT  TT  S  EEE  SS EE  TTGG----GG:    
ExpBur          :ebbeebbebeebeeebebebbebebebbbebe----bb:

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