[pdbjlvh2]Protein Model on 5awc_A_1_G

Protein Model on 5awc_A_1_G_1 (TEMPLATE: 5awc )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(TLR8_HUMAN)	A 1 (A)	polymer(polypeptide(L)) [749 aa]	Toll-like receptor 8 :TLR8_HUMAN
2	b		G 1 (G)	branched(oligosaccharide)	beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose	476K 478Q 534Y 538T 558V 560D 562S 588V 590N 612E 614V (identity: 100.0 %/95.1 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:5awc_A_1 identity=95.1%

queryA        31:SRSYPCDEKKQNDSVIAECSNRRLQEVPQTVGKYVTELDLSDNFITHITNESFQGLQNLTKINLNHNPNVQHQNGNPGIQSNGLNITDGAFLNLKNLREL: 130
                :***********   ********************************************************            ******************:
5awc_A_1       9:SRSYPCDEKKQXXXVIAECSNRRLQEVPQTVGKYVTELDLSDNFITHITNESFQGLQNLTKINLNHNPNVXXXXXXXXXXXXGLNITDGAFLNLKNLREL: 108
SecStr          :   SSSEEE  --- EEE  SS  SS  S   TT  EEE TTS   EE TTTTTT TT  EEE  S S  ------------  EE TTTTTT TT  EE:    
ExpBur          :ebeebbbeeee---ebbebbebebeebbeebeeebeebebbebebeebeeebbeebeebbebbbbbbbee------------ebebeeebbeebeebeeb:    

queryA       131:LLEDNQLPQIPSGLPESLTELSLIQNNIYNITKEGISRLINLKNLYLAWNCYFNKVCEKTNIEDGVFETLTNLELLSLSFNSLSHVPPKLPSSLRKLFLS: 230
                :****************************************************************************************************:
5awc_A_1     109:LLEDNQLPQIPSGLPESLTELSLIQNNIYNITKEGISRLINLKNLYLAWNCYFNKVCEKTNIEDGVFETLTNLELLSLSFNSLSHVPPKLPSSLRKLFLS: 208
SecStr          :E TTS  SS  SS  TT SEEE  SS   EE HHHHTT TT SEEE  SSS TT      EE TTTTTT TT  EEE  SS  SS  S   TT SEEE T:    
ExpBur          :bbbbbebeebbeebbeebeebbbbbbebbebeeebbbebeebebbebbbbbbeeeeeeebeeeebbbeebeebebbbbbbbbbeebbeebbebbeebebb:    

queryA       231:NTQIKYISEEDFKGLINLTLLDLSGNCPRCFNAPFPCVPCDGGASINIDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNMPHLKVLDLEFNYLVGEIASG: 330
                :****************************************************************************************************:
5awc_A_1     209:NTQIKYISEEDFKGLINLTLLDLSGNCPRCFNAPFPCVPCDGGASINIDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNMPHLKVLDLEFNYLVGEIASG: 308
SecStr          :TS   EE SSTTTT TT  EEE TTSS   TT SS    SGGG   EE TTTTTT TT  EEE TTS  S   GGGGTT TT  EEE TTS  HHHHHS :    
ExpBur          :bbebeebbeeebeebeebebbbbbbbbbbbeeeebebeebeebeebebeeebbeebeebeebbbbbbbbeebeeebbeebeebebbbbbebebbebbeeb:    

queryA       331:AFLTMLPRLEILDLSFNYIKGSYPQHINISRNFSKLLSLRALHLRGYVFQELREDDFQPLMQLPNLSTINLGINFIKQIDFKLFQNFSNLEIIYLSENRI: 430
                :****************************************************************************************************:
5awc_A_1     309:AFLTMLPRLEILDLSFNYIKGSYPQHINISRNFSKLLSLRALHLRGYVFQELREDDFQPLMQLPNLSTINLGINFIKQIDFKLFQNFSNLEIIYLSENRI: 408
SecStr          :GGGGG TT  EEE  S   TT   SB    GGGGG TT  EEE TT   SEE GGGGGGGTT TT  EEE TTS   EE GGGGGGSS  SEEE  SS  :    
ExpBur          :ebbeebeebbebbbbbbbeeeeeeeebebbeebeebebbebbbbbbbbbeebeeebbebbbebeebebbbbbebebeebebebbeebeebebbbbbebeb:    

queryA       431:SPLVKDTRQSYANSSSFQRHIRKRRSTDFEFDPHSNFYHFTRPLIKPQCAAYGKALDLSLNSIFFIGPNQFENLPDIACLNLSANSNAQVLSGTEFSAIP: 530
                :***                        *************************************************************************:
5awc_A_1     409:SPLXXXXXXXXXXXXXXXXXXXXXXXXDFEFDPHSNFYHFTRPLIKPQCAAYGKALDLSLNSIFFIGPNQFENLPDIACLNLSANSNAQVLSGTEFSAIP: 508
SecStr          :   ------------------------  SS TTS SSS  S SS HHHHTTS EEE TTS   S  TTTTTT    SEEE TTS       S TTTTST:    
ExpBur          :ebe------------------------eeebebeeebbeeeeeebeeebeeeeebbbbbebebeebbeebbeebbebbbbbbbebebebebebebbeebe:    
Contact         :                                             b b                                                    

queryA       531:HVKYLDLTNNRLDFDNASALTELSDLEVLDLSYNSHYFRIAGVTHHLEFIQNFTNLKVLNLSHNNIYTLTDKYNLESKSLVELVFSGNRLDILWNDDDNR: 630
                :****************************************************************************************************:
5awc_A_1     509:HVKYLDLTNNRLDFDNASALTELSDLEVLDLSYNSHYFRIAGVTHHLEFIQNFTNLKVLNLSHNNIYTLTDKYNLESKSLVELVFSGNRLDILWNDDDNR: 608
SecStr          :T SEEE  S       TTTTTT TT  EEE  S HHHHT TTS    GGGGG SS  EEE TTS     SS     BSS  EEE TTS HHHHT TT  T:    
ExpBur          :ebebbbbbebebebeeeebbebbeebbbbbbbebeeebeeeeeebbbbbbeebeebeebbbbebebebbeeeeebebebbeebbbbbbbbeebbeeebee:    
Contact         :   b   b                   b b b                         b b                     b b                

queryA       631:YISIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTELHINDNMLKFFNWTLLQQFPRLELLDLRGNKLLFLTDSLSDFTSSLRTLLLSHNRISHLPSG: 730
                :****************************************************************************************************:
5awc_A_1     609:YISIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTELHINDNMLKFFNWTLLQQFPRLELLDLRGNKLLFLTDSLSDFTSSLRTLLLSHNRISHLPSG: 708
SecStr          :TTTTTTTBTT  EEE TTS  S   HHHHHTS TT SEEE  SS  S   GGGGGG TT  EEE  SS      TTGGGT S   EEE  SS      TT:    
ExpBur          :bbebbebbeebeebbbbebebeebeeebbebbbebbeebbbbebebeebebebbeebeebeebbbeebebeebbeebeebbebbebbbbbebebeebbeb:    

queryA       731:FLSEVSSLKHLDLSSNLLKTINKSALETKTTTKLSMLELHGNPFECTCDIGDFRRWMDEHLNVKIPRLVDVICASPGDQRGKSIVSLE: 818
                :****************************************************************************************:
5awc_A_1     709:FLSEVSSLKHLDLSSNLLKTINKSALETKTTTKLSMLELHGNPFECTCDIGDFRRWMDEHLNVKIPRLVDVICASPGDQRGKSIVSLE: 796
SecStr          :HHHH SS  EEE  SS      HHHH  SS     EEE TT  EE SGGGHHHHHHHHTTTTSB   GGGSBEEESGGGTTSBTTS  :    
ExpBur          :bbbbbeebeebbbbebebebbeeebbeeeeebebeebbbbebebebeeebbebbebbeeeeebebbebbbbebeeeeebeeebbbeee:

Protein Model on 5awc_A_1_G_1 (TEMPLATE: 5awc )

Input Residue Numbers for Focused Sites