Protein Model on 3w3m_A_1_E_1 (TEMPLATE: 3w3m )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)		 type description a(query A)
1 a A(TLR8_HUMAN) A 1 (A) polymer(polypeptide(L)) [751 aa] Toll-like receptor 8 :TLR8_HUMAN
2 b E 1 (A) non-polymer(RX8) 1-[4-amino-2-(ethoxymethyl)-1H-imidazo[4,5-c]quinolin-1-yl]-2-methylpropan-2-ol 348Y 349I 351G 352S 353Y 376G 378V 405F (identity: 100.0 %/95.3 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:3w3m_A_1 identity=95.3%
queryA        31:SRSYPCDEKKQNDSVIAECSNRRLQEVPQTVGKYVTELDLSDNFITHITNESFQGLQNLTKINLNHNPNVQHQNGNPGIQSNGLNITDGAFLNLKNLREL: 130
                :**********************************************************************            ******************:
3w3m_A_1       9:SRSYPCDEKKQNDSVIAECSNRRLQEVPQTVGKYVTELDLSDNFITHITNESFQGLQNLTKINLNHNPNVXXXXXXXXXXXXGLNITDGAFLNLKNLREL: 108
SecStr          :    SSEEEEETTEEEEE TTS  SS  S   TT SEEE  S    EE SSSSTT  S  EEE  S S  ------------  EE TTTTTT S   EE:    
ExpBur          :ebeebbbeeeeeebebbebeebebeebbeebeeebbebebbebebeebeeebbeebeebeebbbbebeee------------ebebeebbbeebeebeeb:    

queryA       131:LLEDNQLPQIPSGLPESLTELSLIQNNIYNITKEGISRLINLKNLYLAWNCYFNKVCEKTNIEDGVFETLTNLELLSLSFNSLSHVPPKLPSSLRKLFLS: 230
                :****************************************************************************************************:
3w3m_A_1     109:LLEDNQLPQIPSGLPESLTELSLIQNNIYNITKEGISRLINLKNLYLAWNCYFNKVCEKTNIEDGVFETLTNLELLSLSFNSLSHVPPKLPSSLRKLFLS: 208
SecStr          :E TTS  SS  SS  TT SEEE  SS   EE TTTTTT TT  EEE  SSS TTS     EE TTSSTT SS  EEE  SS  SS  SS  TT SEEE T:    
ExpBur          :bbbebebeebbeebbebbebbbbbbbbbeebbeebbbebeebebbebbbbbbeeeeeeebeeeebbbeebeebebbbbbbbbbeebbeebbebbeebebb:    

queryA       231:NTQIKYISEEDFKGLINLTLLDLSGNCPRCFNAPFPCVPCDGGASINIDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNMPHLKVLDLEFNYLVGEIASG: 330
                :****************************************************************************************************:
3w3m_A_1     209:NTQIKYISEEDFKGLINLTLLDLSGNCPRCFNAPFPCVPCDGGASINIDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNMPHLKVLDLEFNYLVGEIASG: 308
SecStr          :TS   EE SSSSTT SS  EEE TTSS   TT SS    SGGG   EE TTTTTT  S  EEE TTS  SS  GGGSTT TT  EEE  SS  HHHHHS :    
ExpBur          :bbebeebeeeebeebeebebbbbbbbbbbeeeeebeeeebeebeebebeeebbeebeebeebbbbbbbbeebeebbbeebeebebbbbbebebbebbeeb:    

queryA       331:AFLTMLPRLEILDLSFNYIKGSYPQHINISRNFSKLLSLRALHLRGYVFQELREDDFQPLMQLPNLSTINLGINFIKQIDFKLFQNFSNLEIIYLSENRI: 430
                :****************************************************************************************************:
3w3m_A_1     309:AFLTMLPRLEILDLSFNYIKGSYPQHINISRNFSKLLSLRALHLRGYVFQELREDDFQPLMQLPNLSTINLGINFIKQIDFKLFQNFSNLEIIYLSENRI: 408
SecStr          :TTGGG TT  EEE  S   TT   SB    GGGGG SS  EEE  S   SEE GGGSGGGTT TT  EEE  SS   EE TTSGGGSSS  EEE  SS  :    
ExpBur          :ebbeebeebeebbbbbbbeeeeeeeebebbebbeebeebebbbbbbbbbbebeeebbebbbebeebebbbbbebebeebebebbeebeebeebbbbebeb:    
Contact         :                 bb bbb                      b b                          b                         

queryA       431:SPLVKDTRQSYANSSSFQRHIRKRRSTDFEFDPHSNFYHFTRPLIKPQCAAYGKALDLSLNSIFFIGPNQFENLPDIACLNLSANSNAQVLSGTEFSAIP: 530
                :***                         ************************************************************************:
3w3m_A_1     409:SPLXXXXXXXXXXXXXXXXXXXXXXXXXFEFDPHSNFYHFTRPLIKPQCAAYGKALDLSLNSIFFIGPNQFENLPDIACLNLSANSNAQVLSGTEFSAIP: 508
SecStr          :   -------------------------  S TTS SSS  S SS HHHHTTS EEE  SS   S  TTTTTT    SEEE TT     B  S TTTTST:    
ExpBur          :eee-------------------------eeeebeeeebeeeeebbeeebeeeeebbbbbebebeebbeebbeebbebbbbbbbebebebebebebbeebe:    

queryA       531:HVKYLDLTNNRLDFDNASALTELSDLEVLDLSYNSHYFRIAGVTHHLEFIQNFTNLKVLNLSHNNIYTLTDKYNLESKSLVELVFSGNRLDILWNDDDNR: 630
                :****************************************************************************************************:
3w3m_A_1     509:HVKYLDLTNNRLDFDNASALTELSDLEVLDLSYNSHYFRIAGVTHHLEFIQNFTNLKVLNLSHNNIYTLTDKYNLESKSLVELVFSGNRLDILWNDDDNR: 608
SecStr          :T SEEE  SS  B   TTTTTT SS  EEE TT TTTTT SSS    GGGGG SS  EEE TT      SS     BSS  EEE  SS HHHHT TT  T:    
ExpBur          :ebebbbbbebebbbeeeebbebbeebbbbbbbebbeebeeeeeebbbbbbeebeebeebbbbebebebbbeeeebebebbeebbbbbbbbeebbeeebee:    

queryA       631:YISIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTELHINDNMLKFFNWTLLQQFPRLELLDLRGNKLLFLTDSLSDFTSSLRTLLLSHNRISHLPSG: 730
                :****************************************************************************************************:
3w3m_A_1     609:YISIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTELHINDNMLKFFNWTLLQQFPRLELLDLRGNKLLFLTDSLSDFTSSLRTLLLSHNRISHLPSG: 708
SecStr          :TTTTTTTBSS  EEE TTS  S   HHHHHTS TT SEEE  SS      GGGGGG TT  EEE  SS      S HHHH S   EEE  SS      TT:    
ExpBur          :bbebbebbeebeebbbbebebeebbeebbebbbebbeebbbbebebeebebebbeebeebebbbbeebebeebbeebbebbebbebbbbbebebeebbee:    

queryA       731:FLSEVSSLKHLDLSSNLLKTINKSALETKTTTKLSMLELHGNPFECTCDIGDFRRWMDEHLNVKIPRLVDVICASPGDQRGKSIVSLE: 818
                :****************************************************************************************:
3w3m_A_1     709:FLSEVSSLKHLDLSSNLLKTINKSALETKTTTKLSMLELHGNPFECTCDIGDFRRWMDEHLNVKIPRLVDVICASPGDQRGKSIVSLE: 796
SecStr          :SSTT     EEE  SS      TTTS  SS     EEE TT  B  SGGGHHHHHHHHH SSSB   TTSSBB SSTTTTTSBTTS  :    
ExpBur          :bbbebebbebbbbbebebeebeeebbebeeeeebeebbbbebebebeeebeebeebbeeeeebebbebbbbebbeeeebeeebbeeee:

Input Residue Numbers for Focused Sites

ex) 2,15,123