[pdbjlvh2]Protein Model on 4r5d_A_1_D

Protein Model on 4r5d_A_1_D_1 (TEMPLATE: 4r5d )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(TLR8_HUMAN)	A 1 (A)	polymer(polypeptide(L)) [441 aa]	Leucine rich repeat protein
2	b		D 1 (A)	non-polymer(SO4)	SULFATE ION	514A(N) 534Y 536D(A) 558V(W) 560D(N) (identity: 20.0 %/35.0 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:4r5d_A_1 identity=35.0%

queryA       512:LSANSNAQVLSGTEFSAIPHVKYLDLTNNRLDFDNASALTELSDLEVLDLSYNSHYFRIAGVTHHLEFIQNFTNLKVLNLSHNNIYTLTDKYNLESKSLV: 611
                :   **      *      * * ** *  * *     *** **  *  * ** *       **          ***  **** *    *            :
4r5d_A_1      47:IANNSDIKSVQGIQY--LPNVRYLALGGNKLH--DISALKELTNLGWLNLSNNQLETLPQGV------FEKLTNLTTLNLSNNQLTSLPQ----------: 126
SecStr          :E TTS  S  TTGGG-- TT  EEE TTS  S--  GGGTT TT SEEE  SS      TTT------TTT TT  EEE  SS      T----------:    
ExpBur          :ebeeeebeebebbbe--beebeebbbbbbebe--ebebbeebeebeebbbbebebeebeebb------beebeebebbebbebebeebee----------:    
Contact         :  b                   b b                     b b                                                   

queryA       612:ELVFSGNRLDILWNDDDNRYISIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTELHINDNMLKFFNWTLLQQFPRLELLDLRGNKLLFLTDSLSDFT: 711
                :                       *  *  ** * ** * *   *   *  *   ** *    * *             *  * *  * *  *        :
4r5d_A_1     127:---------------------GVFERLASLTTLNLSNNQLTSLPQGVFERL-TNLTTLNLSNNQLTSLPQGVFERLTNLTTLNLSNNQLTSLPQGVFERL: 204
SecStr          :---------------------TTTTT TT  EEE  SS      TTTTTT -TT  EEE  SS      TTTTTT TT  EEE  SS      TTSSTT :    
ExpBur          :---------------------ebbeebeebeebbbbebebeebeeebbeeb-eebeebbbbebebeebbeebbeebeebeebbbbebebeebeeebbeeb:    

queryA       712:SSLRTLLLSHNRISHLPSGFLSEVSSLKHLDLSSNLLKTINKSALETKTTTKLSMLELH: 770
                : ** ** ** *    ** *       ** * ** * *      *         *  ***:
4r5d_A_1     205:TSLTTLNLSNNQLTSLPDGVFERLTNLKTLNLSNNQLTKEACRAVANALKQAASLHELH: 263
SecStr          :TT  EEE  SS      TTTTTT TT  EEE  SS   STTHHHHHHHHHH TT  EEE:    
ExpBur          :eebbebbbbebebeebeeebbeebeebebbbbbebebeeebbebbbbbbeebeebeebe:

Protein Model on 4r5d_A_1_D_1 (TEMPLATE: 4r5d )

Input Residue Numbers for Focused Sites