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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(TLR8_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [747 aa] | Toll-like receptor 8 :TLR8_HUMAN | |
2 | b | D 1 (D) | branched(oligosaccharide) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | 426S 475I 476K 479C 489S 490L 511N 513S 534Y 536D (identity: 100.0 %/94.9 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:3w3j_A_1 identity=94.9% |
queryA 31:SRSYPCDEKKQNDSVIAECSNRRLQEVPQTVGKYVTELDLSDNFITHITNESFQGLQNLTKINLNHNPNVQHQNGNPGIQSNGLNITDGAFLNLKNLREL: 130 :*********** ******************************************************** ******************: 3w3j_A_1 9:SRSYPCDEKKQXXXVIAECSNRRLQEVPQTVGKYVTELDLSDNFITHITNESFQGLQNLTKINLNHNPNVXXXXXXXXXXXXGLNITDGAFLNLKNLREL: 108 SecStr : SSEEE --- EEE TTS SS TT TT EEE TTS EE TTTTSS TT EEE SSS ------------ EE TTTTTT TT EE: ExpBur :ebeebbbeeee---eebebeebebeebbeebeeebbebbbbebebeebeeebbeebeebbebbbbbbbee------------ebebeebbbeebeebeeb: queryA 131:LLEDNQLPQIPSGLPESLTELSLIQNNIYNITKEGISRLINLKNLYLAWNCYFNKVCEKTNIEDGVFETLTNLELLSLSFNSLSHVPPKLPSSLRKLFLS: 230 :****************************************************************************************************: 3w3j_A_1 109:LLEDNQLPQIPSGLPESLTELSLIQNNIYNITKEGISRLINLKNLYLAWNCYFNKVCEKTNIEDGVFETLTNLELLSLSFNSLSHVPPKLPSSLRKLFLS: 208 SecStr :E TTS SS SS TT SEEE SS EE HHHHTT TT EEE SSS TT S EE TTTTTT TT EEE SS SS SS TT SEEE T: ExpBur :bbbbbebeebbbebbeebbbbbbbbbebbebbeebbbebeebeebebbbbbbeeeeeeebeeeebbbeebeebebbbbbbbbbeebbeebbebbeebebb: queryA 231:NTQIKYISEEDFKGLINLTLLDLSGNCPRCFNAPFPCVPCDGGASINIDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNMPHLKVLDLEFNYLVGEIASG: 330 :****************************************************************************************************: 3w3j_A_1 209:NTQIKYISEEDFKGLINLTLLDLSGNCPRCFNAPFPCVPCDGGASINIDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNMPHLKVLDLEFNYLVGEIASG: 308 SecStr :TS EE SSTTTT TT EEE TTSS TT SS GGG EE TTTTTT TT EEE TTS S GGGGTT TT EEE SS HHHHHS : ExpBur :bbebeebbeeebeebeebebbbbbbbbbbbeeeebebeebeeeeebebeeebbeebeebeebbbbbbbbeebebbbbeebeebebbbbbebebbebbeeb: queryA 331:AFLTMLPRLEILDLSFNYIKGSYPQHINISRNFSKLLSLRALHLRGYVFQELREDDFQPLMQLPNLSTINLGINFIKQIDFKLFQNFSNLEIIYLSENRI: 430 :****************************************************************************************************: 3w3j_A_1 309:AFLTMLPRLEILDLSFNYIKGSYPQHINISRNFSKLLSLRALHLRGYVFQELREDDFQPLMQLPNLSTINLGINFIKQIDFKLFQNFSNLEIIYLSENRI: 408 SecStr :SGGGG TT EEE S TT SS GGGGG TT EEE TT SEE GGGGGGGTT TT EEE SS EE GGGGGGSS EEE SS : ExpBur :ebbeebeebeebbbbbbbeeeeeeeebebbeebeebeebebbbbbbbbbeebeeebbebbbebeebebbbbbebebeebebebbeebeebeebbbbebeb: Contact : b queryA 431:SPLVKDTRQSYANSSSFQRHIRKRRSTDFEFDPHSNFYHFTRPLIKPQCAAYGKALDLSLNSIFFIGPNQFENLPDIACLNLSANSNAQVLSGTEFSAIP: 530 :** *************************************************************************: 3w3j_A_1 409:SPXXXXXXXXXXXXXXXXXXXXXXXXXDFEFDPHSNFYHFTRPLIKPQCAAYGKALDLSLNSIFFIGPNQFENLPDIACLNLSANSNAQVLSGTEFSAIP: 508 SecStr : ------------------------- SS TTS SSS S SS HHHHTTSEEEE TTS S TTTTTT EEEEE TTS S TTTTST: ExpBur :ee-------------------------eeebebeeebbeeeeebbeeebeeeeebbbbbebebeebbeebbeebbebbbbbbbebebebebebebbeebe: Contact : bb b bb b b queryA 531:HVKYLDLTNNRLDFDNASALTELSDLEVLDLSYNSHYFRIAGVTHHLEFIQNFTNLKVLNLSHNNIYTLTDKYNLESKSLVELVFSGNRLDILWNDDDNR: 630 :****************************************************************************************************: 3w3j_A_1 509:HVKYLDLTNNRLDFDNASALTELSDLEVLDLSYNSHYFRIAGVTHHLEFIQNFTNLKVLNLSHNNIYTLTDKYNLESKSLVELVFSGNRLDILWNDDDNR: 608 SecStr :T EEE TTS TTTTTT TT EEE TT HHHHT TTS GGGGG SS EEE TT SS EESS EEE TTS HHHHT TT T: ExpBur :ebebbbbbebebbbeeeebbebbeebbbbbbbebeeebeeeeeebbbbbbeebeebeebebbebebebbbeeeebebebbeebbbbbbbbeebbeeebee: Contact : b b queryA 631:YISIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTELHINDNMLKFFNWTLLQQFPRLELLDLRGNKLLFLTDSLSDFTSSLRTLLLSHNRISHLPSG: 730 :****************************************************************************************************: 3w3j_A_1 609:YISIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTELHINDNMLKFFNWTLLQQFPRLELLDLRGNKLLFLTDSLSDFTSSLRTLLLSHNRISHLPSG: 708 SecStr :TTTTTTEETT EEE TTS S HHHHHTS TT SEEE SS GGGGGG TT EEE SS S GGGT SS EEE SS TT: ExpBur :bbebbeebeebeebbbbebebeebeeebbebbbeebeebbbbebebeebebebbeebeebeebbbeebebeebbebbeebbebbeebbbbebebeebbee: queryA 731:FLSEVSSLKHLDLSSNLLKTINKSALETKTTTKLSMLELHGNPFECTCDIGDFRRWMDEHLNVKIPRLVDVICASPGDQRGKSIVSL: 817 :***************************************************************************************: 3w3j_A_1 709:FLSEVSSLKHLDLSSNLLKTINKSALETKTTTKLSMLELHGNPFECTCDIGDFRRWMDEHLNVKIPRLVDVICASPGDQRGKSIVSL: 795 SecStr : HHHH S SEEE SS S HHHH SS EEE TT EE SGGGHHHHHHHHH TTSB S GGGSBEEESGGGTT BTT : ExpBur :bbbebebbeebbbbebebebbeeebbeeeeeeebeebbbbebebebeeebebbeebbeeeeebebbebbbbebeeeeeeeeebbbee: |