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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(TLR8_HUMAN) | A 2 (A) | polymer(polypeptide(L)) [747 aa] | Toll-like receptor 8 :TLR8_HUMAN | |
2 | b | C 2 (C) | branched(oligosaccharide) | beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | 426S 472R 475I 476K 479C 489S 490L 511N 513S 534Y 536D (identity: 100.0 %/94.9 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:3wn4_A_2 identity=94.9% |
queryA 32:RSYPCDEKKQNDSVIAECSNRRLQEVPQTVGKYVTELDLSDNFITHITNESFQGLQNLTKINLNHNPNVQHQNGNPGIQSNGLNITDGAFLNLKNLRELL: 131 :********* ********************************************************* *******************: 3wn4_A_2 10:RSYPCDEKKXXDSVIAECSNRRLQEVPQTVGKYVTELDLSDNFITHITNESFQGLQNLTKINLNHNPNXXXXXXXXXXXXXGLNITDGAFLNLKNLRELL: 109 SecStr : S EEE -- EEE SS SS S TT SEEE TTS EE TTTTTT TT EEE S ------------- EE TTTTTT TT EEE: ExpBur :eeebbeeee--eebebebeebebeebbeebbeebbebebbebebeebeeebbeebeebeebbbbebee-------------ebebeebbbeebeebeebb: queryA 132:LEDNQLPQIPSGLPESLTELSLIQNNIYNITKEGISRLINLKNLYLAWNCYFNKVCEKTNIEDGVFETLTNLELLSLSFNSLSHVPPKLPSSLRKLFLSN: 231 :****************************************************************************************************: 3wn4_A_2 110:LEDNQLPQIPSGLPESLTELSLIQNNIYNITKEGISRLINLKNLYLAWNCYFNKVCEKTNIEDGVFETLTNLELLSLSFNSLSHVPPKLPSSLRKLFLSN: 209 SecStr : TTS SS TT TT SEEE SS EE HHHHTT TT EEE SSS TT EE TTTTTT TT EEE SS SS S TT SEEE TT: ExpBur :bbebebeebbeebbebbbbbbbbbbebbebbeebbbebeebebbebbbbbbeeeeeeebeeeebbbeebeebebbbbbbbbbeebbeebbebbeebebbb: queryA 232:TQIKYISEEDFKGLINLTLLDLSGNCPRCFNAPFPCVPCDGGASINIDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNMPHLKVLDLEFNYLVGEIASGA: 331 :****************************************************************************************************: 3wn4_A_2 210:TQIKYISEEDFKGLINLTLLDLSGNCPRCFNAPFPCVPCDGGASINIDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNMPHLKVLDLEFNYLVGEIASGA: 309 SecStr :S EE SSTTTT TT EEE TTSS TT SS GGG EE TTTTTT TT EEE TTS S GGGGTT TT EEE TTS HHHHHH G: ExpBur :bebeebbeeebeebeebbbbbbbbbbbbbeeeebebeebeeeeebebeeebbeebeebeebbbbbbbbeebebbbbeebeebebbbbbebebbebbeebe: queryA 332:FLTMLPRLEILDLSFNYIKGSYPQHINISRNFSKLLSLRALHLRGYVFQELREDDFQPLMQLPNLSTINLGINFIKQIDFKLFQNFSNLEIIYLSENRIS: 431 :****************************************************************************************************: 3wn4_A_2 310:FLTMLPRLEILDLSFNYIKGSYPQHINISRNFSKLLSLRALHLRGYVFQELREDDFQPLMQLPNLSTINLGINFIKQIDFKLFQNFSNLEIIYLSENRIS: 409 SecStr :GGGG TT EEE S TT SS GGGGG TT EEE TT SEE GGGGGGGTT TT EEE SS EE GGGGGGSS SEEE SS : ExpBur :bbeebeebeebbbbbbbeeeeeeeebebbeebeebeebebbbbbbbbbeebeeebbebbbebeebebbbbbebebeebebebbeebeebebbbbbebebe: Contact : b queryA 432:PLVKDTRQSYANSSSFQRHIRKRRSTDFEFDPHSNFYHFTRPLIKPQCAAYGKALDLSLNSIFFIGPNQFENLPDIACLNLSANSNAQVLSGTEFSAIPH: 531 :** *************************************************************************: 3wn4_A_2 410:PLXXXXXXXXXXXXXXXXXXXXXXXXXFEFDPHSNFYHFTRPLIKPQCAAYGKALDLSLNSIFFIGPNQFENLPDIACLNLSANSNAQVLSGTEFSAIPH: 509 SecStr : ------------------------- S TTS SSS S SS HHHHTTS EEE TTS S TTTTTT SEEE TTS S TTTTSTT: ExpBur :be-------------------------eebebeeebbeeeeeebeeebeeeeebbbbbebebeebbeebbeebbebbbbbbbebebebebebebbeebee: Contact : b bb b bb b b queryA 532:VKYLDLTNNRLDFDNASALTELSDLEVLDLSYNSHYFRIAGVTHHLEFIQNFTNLKVLNLSHNNIYTLTDKYNLESKSLVELVFSGNRLDILWNDDDNRY: 631 :****************************************************************************************************: 3wn4_A_2 510:VKYLDLTNNRLDFDNASALTELSDLEVLDLSYNSHYFRIAGVTHHLEFIQNFTNLKVLNLSHNNIYTLTDKYNLESKSLVELVFSGNRLDILWNDDDNRY: 609 SecStr : SEEE SS TTTTTT TT EEE S HHHHT TTS GGGGG SS EEE TTS SS BSS EEE TTS HHHHT TT TT: ExpBur :bebbbbbebebebeeeebbebbeebbbbbbbebeeebeeeeeebbbbbbeebeebeebbbbebebeebeeeeebebebbeebbbbbbbbeebbeeebeeb: Contact : b b queryA 632:ISIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTELHINDNMLKFFNWTLLQQFPRLELLDLRGNKLLFLTDSLSDFTSSLRTLLLSHNRISHLPSGF: 731 :****************************************************************************************************: 3wn4_A_2 610:ISIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTELHINDNMLKFFNWTLLQQFPRLELLDLRGNKLLFLTDSLSDFTSSLRTLLLSHNRISHLPSGF: 709 SecStr :TTTTTTBTT EEE SS S HHHHHTS TT SEEE SS S GGGGGG TT EEE SS S GGGT SS EEE SS TTT: ExpBur :bebbebbeebeebbbbebebeebbeebbebbbeebeebbbbebebeebebebbeebeebeebbbeebebeebbeebeebbebbeebbbbebebeebbebb: queryA 732:LSEVSSLKHLDLSSNLLKTINKSALETKTTTKLSMLELHGNPFECTCDIGDFRRWMDEHLNVKIPRLVDVICASPGDQRGKSIVSLE: 818 :***************************************************************************************: 3wn4_A_2 710:LSEVSSLKHLDLSSNLLKTINKSALETKTTTKLSMLELHGNPFECTCDIGDFRRWMDEHLNVKIPRLVDVICASPGDQRGKSIVSLE: 796 SecStr :TTS TT EEE SS HHHH SSS SEEE TT EE SGGGHHHHHHHHH TTSB GGGSBEEESTTTTTSBTTS : ExpBur :bbbbebbeebbbbebebeebeeebbeeeeebebeebbbeebebebeeebbebbebbeeeeebebbebbbbebebeeebeeebbeeee: |