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ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(TLR8_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [750 aa] | Toll-like receptor 9 :TLR9_HORSE | |
2 | b | C 1 (C) | polymer(polydeoxyribonucleotide) [10 base] | DNA (5'-D(*AP*GP*GP*CP*GP*TP*TP*TP*TP*T)-3') | 51N(W) 53R(F) 55Q(K) 72D(S) 73N 74F(R) 76T(H) 96H(W) 101Q(P) 106N(S) 107P 108G(M) 110Q(F) 111S(P) 155Q(R) 183F(Y) 184N(K) 210F(Y) 231N(Y) 258P(R) 264P(R) 265F(N) 295S(K) (identity: 8.7 %/36.7 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:5y3j_A_1 identity=36.7% |
queryA 35:PCDEKKQNDSVIAECSNRRLQEVPQTVGKY----VTELDLSDNFITHITNESFQGLQNLTKINLNHNPNVQHQNGNPGIQSNGLNITDGAFLNLKNLREL: 130 :** * * ** ** * * * * * * * ** * ** * * * ** * **: 5y3j_A_1 13:PCELQPHG---LVNCNWLFLKSVPHFSAAAPRDNVTSLSLLSNRIHHLHDSDFAQLSNLQKLNLKWN--CPPAGLSPMHFPCHMTIEPNTFLAVPTLEEL: 107 SecStr :TSEEETTT---EEE TTS SS TTS GGG EEE TT EE TTSSTT TT EEE TTS--B TTTSTT EE TTTTTT TT EE: ExpBur :ebeeeeeb---ebebeeeebeebbebeeebebeebebbbbebbebeebeeebbeebeebeebebeeb--bbbeebbeeeeebebeeeeebbeebeebeeb: Contact : b b b bbb b b b bbb bb queryA 131:LLEDNQLPQIPSGLPESLTELSLIQNNIYNITKEGISRLINLKNLYLAWNCYFNKVCEKT-NIEDGVFETLTNLELLSLSFNSLSHVPPKLPSSLRKLFL: 229 : * * * ** ** * * ** * * ** *** * * * ** *** * * ** ** ** * *: 5y3j_A_1 108:NLSYNGITTVPA-LPSSLVSLILSRTNILQLDPTSLTGLHALRFLYMDGNCYYKNPCGRALEVAPGALLGLGNLTHLSLKYNNLTTVPRSLPPSLEYLLL: 206 SecStr :E SB SS - TT EEE TTS EE TTTTTT TT EEE SSBTTB SS EE TTTTTT TT EEE SS SS SS TT SEEE : ExpBur :bbbbbbbeebbe-bbeebebbebbbbebbebeeebbeebeebeebebbbbbbeebeeeeebebeeebbeebeebbbbbbeebebeebbeebbeebeebbb: Contact : b bb b queryA 230:SNTQIKYISEEDFKGLINLTLLDLSGNCPRCFNAPFPCVPCDGG-ASINIDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNMPHLKVLDLEFNYLVGEIA: 328 :* * ** * * ** *** ** * *** * * * * * * * ** * ** * **** * * * : 5y3j_A_1 207:SYNHIVTLAPEDLANLTALRVLDVGGNCRRCDHARNPCVECPHKFPQLHSDTFS--HLSRLEGLVLKDSSLYQLNPRWFRGLGNLTVLDLSENFLYDCIT: 304 SecStr :TTS EE GGGGTT TT SEEE TTSS GGG SS TT EE TTTTT--T TT EEE SS SS GGGGTT TT EEE TTSS TTGGG: ExpBur :bbbebeebbbebbeebeebeebbbbbbbbbeeeeeeeeeebeeeeeebeeebbe--ebeebebbbbebbbbeebeeebbeebeebbebbbbbbbbbebbe: Contact : b b bb b queryA 329:SGAFLTMLPRLEILDLSFNYIKGSYPQHINISRNFSKLLSLRALHLRGYVFQELREDDFQPLMQLPNLSTINLGINFIKQIDFKLFQNFSNLEIIYLSEN: 428 : * * * ***** * * * **** * * * * *** ** * * *** * * * * * ** *: 5y3j_A_1 305:KTKAFQGLAQLRRLNLSFNYHKKVSFAHLTLAPSFGSLLSLQELDMHGIFFRSLSQKTLQPLARLPMLQRLYLQMNFINQAQLGIFKDFPGLRYIDLSDN: 404 SecStr :T TTTT TT EEE TT TT BS GGGGG TT EEE TTS BSEE HHHHGGGTT TT EEE SS EE GGGGTT SS EEE SS: ExpBur :ebebbeebeebeebebbbbbeeeeeeeebebbebbeebeebeebbbbbbbbebbeeebbebbbebeebeebbbbebebeebebbbbeebeebebbbbbeb: queryA 429:RISPLVKDTRQSYANSSSFQRHIRKRR----------STDFEFDPHSNFYHFTRPLIKPQCAAYGKALDLSLNSIFFIGPNQFENLPDIACLNLSANSNA: 518 :*** * * ** * * **** * * * * ** ** ** : 5y3j_A_1 405:RISGAVEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSEDF----------------MPSCKNLSFTLDLSRNNLVTVQPEMFAQLSRLQCLRLSHNSIS: 488 SecStr : SS ------------------------------ TTT----------------S STTSS EEE SS SS GGGGTT TT SEEE TTS : ExpBur :ebeeeee------------------------------eeeb----------------bebbeebebbbbbbebebeebeeebbeebeebebbebbebebe: queryA 519:QVLSGTEFSAIPHVKYLDLTNNRLDFDNASALTELSDLEVLDLSYNSHYFRIAGVTHHLEFIQNFTNLKVLNLSHNNIYTLTDKYNLESKSLVELVFSGN: 618 :* * * *** * ** *** ** ******* * ** * * * * * * ** * * * ** * ****: 5y3j_A_1 489:QAVNGSQFVPLTSLQVLDLSHNKLDLYHGRSFTELPRLEALDLSYNSQPFSMRGVGHNLSFVAQLPTLRYLSLAHNGIHSRVSQ-QLCSTSLWALDFSGN: 587 SecStr : SSSSTT TT EEE SS STTTTTT TT EEE TT HHHHTSTT GGGGG TT EEE TTS SSS S- EESS EEE SS: ExpBur :bebebebbeebeebebbbbbebebebeeeebbebbeebebbbbbebeebbeeeeeebebebbeebeebebbbbbebebbeebbe-ebebebbebbbbbbb: queryA 619:RLDILWNDDDNRYISIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTELHINDNMLKFFNWTLLQQFPRLELLDLRGNKLLFLTDSLSDFTSSLRTLL: 718 : * * * * * ** * ***** *** *** ** * * * **** * * ** *** ** * * * * : 5y3j_A_1 588:SLSQMWAEGD-LYLRFFQGLRSLIRLDLSQNRLHTLLPCTLGNLPKSLQLLRLRNNYLAFFNWSSLTLLPNLETLDLAGNQLKALSNGSLPSGTQLQRLD: 686 SecStr : HHHHHTSTT-TTTTTTTEETT EEE SS S HHHHTTS TT EEE TTS GGGGGGSTT EEE TTS EE SS S TT EEE: ExpBur :bbeebbeeee-ebeebbbbbeebebbbbbebebeeeeeebbbbbbeebebbebeebebeebebebbeebeebebbbbbbbebebbbeeebbeebebeebe: queryA 719:LSHNRISHLPSGFLSEVSSLKHLDLSSNLLKTINKSALETKTTTKLSMLELHGNPFECTCDIGDFRRWMDEHLNVK--IPRLVD-VICASPGDQRGKSIV: 815 : * * * ** * * ** * * * * * * ** * * * * * * * * * *** * ** : 5y3j_A_1 687:VSRNSIIFVVPGFFALATRLRELNLSANALRTVEPSWFGFLAGS-LEVLDVSANPLHCACGAA----FVDFLLQVQAAVPGLPSRVKCGSPGQLQGRSIF: 781 SecStr : TTS EE TTTTTT TT EEE SS S GGGGTT GGG- SEEE S EE TT H----HHHHHHHTGGG TTHHHH BEEESGGGTTSBTT: ExpBur :bbebebeebeeebbeebeebeebebbebebeebeeebbbeebee-beebbbbebebebeeebe----bbebbbebeebbebbbeebebebeeebeeebbb: queryA 816:SLEL: 819 : *: 5y3j_A_1 782:AQDL: 785 SecStr :SS : ExpBur :eeeb: |