Protein Model on 5d3i_A_1_C_1 (TEMPLATE: 5d3i )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)		 type description a(query A)
1 a A(TLR8_HUMAN) A 1 (A) polymer(polypeptide(L)) [549 aa] Toll-like receptor 2 :TLR2_MOUSE
2 b C 1 (C) branched(oligosaccharide) 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose 616S 647S 648L(R) 668E(F) 670H(N) 694D 718L(Y) (identity: 42.9 %/29.7 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:5d3i_A_1 identity=29.7%
queryA       212:SLSHVPPKLPSSLRKLFLSNTQIKYISEEDFKGLINLTLLDLSGNCPRCFNAPFPCVPCDGGASIN-IDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNM: 310
                :*    *  *      * **   * **   *     **  * *                      ** *   **  *  *  * **   *      **   :
5d3i_A_1      20:SFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKS------------------SRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPL: 101
SecStr          :  SS  S   TT  EEE  S    EE SSTTSS TT  EEE TT------------------S   EE TTTTTT TT  EEE TTS   S  TTTTTT :    
ExpBur          :ebeebbeebeeebebbbbbebebeebbeeebeebeebeebebee------------------bebeebeeebbeebeebeebbbbebebeebeeebbeeb:    

queryA       311:PHLKVLDLEFNYLVGEIASGAFLTMLPRLEILDLSFNYIKGSYPQHINISRNFSKLLSLRALHLRGY-VFQELREDDFQPLMQLPNLSTINLGINFIKQI: 409
                :  ** *                                  *   *       *  *  *  *       * * *  **  *  *  *    *        :
5d3i_A_1     102:SSLKYLN-------------------------------LMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQ: 170
SecStr          :TT  EEE------------------------------- TT   SSS SS S TT TT  EEEEEESSS  EE TTTTTT  EEEEEEEEETT  EE TT:    
ExpBur          :eebeebb-------------------------------bbebebeebbeeebbeebeebebbbbbbeeebbebeeebbeebeebeebbbebbebeebeee:    

queryA       410:DFKLFQNFSNLEIIYLSENRISPLVKDTRQSYANSSSFQRHIRKRRS--TDFEFDPHSNFYHFTRPLIKPQCAAYGKAL-DLSLNS-------IFFIGPN: 499
                :  *       *    ***              *   *  *    *      * * *         *  *   *  *  * * * *        *      :
5d3i_A_1     171:SLKSIRDIHHL-TLHLSESAF------LLEIFADILSSVRYLELRDTNLARFQFSPLP-VDEVSSPMKK--LAFRGSVLTDESFNELLKLLRYILELSEV: 260
SecStr          :TTTT  EEEEE-EEE SBSTT------HHHHHHHHTTTBSEEEEES B TT       -  SS     E--EEEES EE HHHHHHHHGGGGG TT  EE:    
ExpBur          :bbeebeebebb-bbbbeebeb------bbebbbbbbebbebbbbeebebeebebeebe-eeeeebebeb--bbbbebebbeebebbbbbbbebbeebeeb:    

queryA       500:QFEN--LPDIACLNLSANSNAQVLSGTEFSAIPHVKYLDLTNNRLDFDNASALTELSDLEVLDLSYNSHYFRIAGVTHHLEFIQNFTNLKVLNLSHNNIY: 597
                : *    *      * *       *   *   *     *      *  *       *          **  *          * *    *  * ** *   :
5d3i_A_1     261:EFDDCTLNGLGDFNPSESDVVSELGKVETVTI---RRLHIPQFYLFYDLSTVYSLLEKVKRITVE-NSKVFLVP-----CSFSQHLKSLEFLDLSEN---: 348
SecStr          :EEES EE S S     TTS     TT  EEEE---ES B TT SS   THHHHHHSTT  EEEEE-SS      -----HHHHHH TT  EEE  SS---:    
ExpBur          :bbbebeeeeebeeeeeeeeebeebeebebbbb---eeeeeeeeeeeeeeeeebebbeebeebbbe-ebebeebe-----bebbeebeebeebbbbeb---:    

queryA       598:TLTDKYNLESK------SLVELVFSGNRLDILWNDDDNRYISIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTELHINDNMLKFFNWTLLQQFPRLE: 691
                :     *   *       **  ** * * *             *   ***** ** * *     *       *     *               *    **:
5d3i_A_1     349:LMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGE-----ILLTLKNLTSLDISRNTFHPMPDSC--QWPEKMRFLNLSSTGIRVVKTCIPQT---LE: 438
SecStr          :   HHHHHHHT TTSSTT  EEE TTS    HHHHHH-----HGGG TT  EEE TT       S  --   TT  EEE TTS  S   TTS TT--- S:    
ExpBur          :ebbbeebeebbbeebbeebeebbbbebebeebeebbe-----bbeebeebebbbbbebebeebeeee--ebbeebeebbbbebebeebeebbbee---be:    
Contact         :                        b                              bb                   b b                     

queryA       692:LLDLRGNKLLFLTDSLSDFTSSLRTLLLSHNRISHLPSGFLSEVSSLKHLDLSSNLLKTINKSALETKTTTKLSMLELHGNPFECTCDIGDFRR------: 785
                : **   * *    ** * *   *  *  * *    **   *  *  *       *   *  *  *      **  **   * * * *    *        :
5d3i_A_1     439:VLDVSNNNL----DSFSLFLPRLQELYISRNKLKTLPDASLFPV--LLVMKIRENAVSTFSKDQL--GSFPKLETLEAGDNHFVCSCELLSFTMETPALA: 530
SecStr          :EEE  SS  ----S      TT  EEE  SS  SS   GGG TT--  EEE  SS      HHHH--HH SS  EEE  S  EE  HHHHHHHHH GGGG:    
ExpBur          :bbbbbebeb----eebebebeebeebebbebebeebbebebbee--bebbebeebebeebeeeeb--eebeebeebbbbebebeeeeebeebeeeeeeee:    
Contact         :  b                       b                                                                         

queryA       786:-----WMDEHLNVKIPRL: 798
                :     * *  *    ***:
5d3i_A_1     531:QILVDWPDSYLCDSPPRL: 548
SecStr          :GTBTTTTTT  EEESTTT:    
ExpBur          :ebbeeeeebbebeeeeeb:

Input Residue Numbers for Focused Sites

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