Protein Model on 5awa_A_1_C_1 (TEMPLATE: 5awa )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)		 type description a(query A)
1 a A(TLR8_HUMAN) A 1 (A) polymer(polypeptide(L)) [735 aa] Toll-like receptor 8 :TLR8_HUMAN
2 b C 1 (C) branched(oligosaccharide) 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose 426S 475I 476K 479C 489S 490L 511N 513S 534Y 536D (identity: 100.0 %/93.6 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:5awa_A_1 identity=93.6%
queryA        32:RSYPCDEKKQNDSVIAECSNRRLQEVPQTVGKYVTELDLSDNFITHITNESFQGLQNLTKINLNHNPNVQHQNGNPGIQSNGLNITDGAFLNLKNLRELL: 131
                :**********  ********************************************************             *******************:
5awa_A_1      10:RSYPCDEKKQXXSVIAECSNRRLQEVPQTVGKYVTELDLSDNFITHITNESFQGLQNLTKINLNHNPNXXXXXXXXXXXXXGLNITDGAFLNLKNLRELL: 109
SecStr          :  SSSEEEE -- EEEE TTS  SS  S   TT  EEE  SS   EE GGGSTT  S  EEE  SS  -------------  EE TTSSTT SS  EEE:    
ExpBur          :eeebbbeeee--ebbbebeebebeebbeebeeebbebebbebebeebeeeebeebeebeebbbbbbee-------------ebebeebbbeebeebeebb:    

queryA       132:LEDNQLPQIPSGLPESLTELSLIQNNIYNITKEGISRLINLKNLYLAWNCYFNKVCEKTNIEDGVFETLTNLELLSLSFNSLSHVPPKLPSSLRKLFLSN: 231
                :****************************************************************************************************:
5awa_A_1     110:LEDNQLPQIPSGLPESLTELSLIQNNIYNITKEGISRLINLKNLYLAWNCYFNKVCEKTNIEDGVFETLTNLELLSLSFNSLSHVPPKLPSSLRKLFLSN: 209
SecStr          :  SS  SS  SS  TT SEEE TTS   EE HHHHTS TT SEEE  SSS TT S    EE TTTTTT TT  EEE  SS  SS  S   TT SEEE TT:    
ExpBur          :bbbbebeebbbebbeebbbbbbbbbebbebbeebbbebeebeebebbbbbeeeeeeeebebeebbbeebeebebbbbbbbbbeebbeebbebbeebebbb:    

queryA       232:TQIKYISEEDFKGLINLTLLDLSGNCPRCFNAPFPCVPCDGGASINIDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNMPHLKVLDLEFNYLVGEIASGA: 331
                :****************************************************************************************************:
5awa_A_1     210:TQIKYISEEDFKGLINLTLLDLSGNCPRCFNAPFPCVPCDGGASINIDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNMPHLKVLDLEFNYLVGEIASGA: 309
SecStr          :S   EE TTSSTT TT SEEE TTSS   TT SS     GGG   EE TTSSTT TT  EEE TTS      GGGGTT TT  EEE TTS  HHHHHS G:    
ExpBur          :bebeebbeebbeebeebbbbbbbbbbbbbeeeebeeeebeeeeebebeeebbeebeebeebbbbbbbbeebebbbbeebeebebbbbbebebbebbeebe:    

queryA       332:FLTMLPRLEILDLSFNYIKGSYPQHINISRNFSKLLSLRALHLRGYVFQELREDDFQPLMQLPNLSTINLGINFIKQIDFKLFQNFSNLEIIYLSENRIS: 431
                :****************************************************************************************************:
5awa_A_1     310:FLTMLPRLEILDLSFNYIKGSYPQHINISRNFSKLLSLRALHLRGYVFQELREDDFQPLMQLPNLSTINLGINFIKQIDFKLFQNFSNLEIIYLSENRIS: 409
SecStr          :GGGG TT  EEE  S   TT   SB    GGGGG TT  EEE TT   SEE SGGGGGGTT TT  EEE  SS   EE GGGGTTSS   EEE  SS   :    
ExpBur          :bbeebeebeebbbbbbbeeeeeeeebebbeebeebeebebbbbbbbbbeebeeebbebbbebeebebbbbbebebeebebebbeebeebeebbbbebebe:    
Contact         :                                                                                              b     

queryA       432:PLVKDTRQSYANSSSFQRHIRKRRSTDFEFDPHSNFYHFTRPLIKPQCAAYGKALDLSLNSIFFIGPNQFENLPDIACLNLSANSNAQVLSGTEFSAIPH: 531
                :*                         **************************************************************************:
5awa_A_1     410:PXXXXXXXXXXXXXXXXXXXXXXXXXDFEFDPHSNFYHFTRPLIKPQCAAYGKALDLSLNSIFFIGPNQFENLPDIACLNLSANSNAQVLSGTEFSAIPH: 509
SecStr          : -------------------------  SS TTS SSS  S SS HHHHTTS EEE  SS   S  TTTTTT    SEEE  SS       S TTTTSTT:    
ExpBur          :e-------------------------eeebebeeeebeeeeeebeeebeeeeebbbbbebebeebbeebbeebbebbbbbbbebebebebebebbeebee:    
Contact         :                                           bb  b         bb                    b b                  

queryA       532:VKYLDLTNNRLDFDNASALTELSDLEVLDLSYNSHYFRIAGVTHHLEFIQNFTNLKVLNLSHNNIYTLTDKYNLESKSLVELVFSGNRLDILWNDDDNRY: 631
                :****************************************************************************************************:
5awa_A_1     510:VKYLDLTNNRLDFDNASALTELSDLEVLDLSYNSHYFRIAGVTHHLEFIQNFTNLKVLNLSHNNIYTLTDKYNLESKSLVELVFSGNRLDILWNDDDNRY: 609
SecStr          :  EEE  SS      TTTTTT TT  EEE  S HHHHT TTS    GGGGG TT  EEE TTS     SS     BSS  EEE TTS HHHHT TT  TT:    
ExpBur          :bebbbbbebebebeeeebbebbeebbbbbbbebeeebeeeeeebbbbbbeebeebeebbbbebebebbbeeeebebebbeebbbbbbbbeebbeeebeeb:    
Contact         :  b b                                                                                               

queryA       632:ISIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTELHINDNMLKFFNWTLLQQFPRLELLDLRGNKLLFLTDSLSDFTSSLRTLLLSHNRISHLPSGF: 731
                :****************************************************************************************************:
5awa_A_1     610:ISIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTELHINDNMLKFFNWTLLQQFPRLELLDLRGNKLLFLTDSLSDFTSSLRTLLLSHNRISHLPSGF: 709
SecStr          :TTTTTTBTT  EEE  SS  S   HHHHHTS TT SEEE  SS  S   GGGGGG TT  EEE  SS      S GGGT S   EEE  SS      TTT:    
ExpBur          :bebbeebeebeebbbbebebeebeeebbebbbeebeebbbbebebeebebebbeebeebeebbbeebebeebbeebeebbebbebbbbbebebeebbebb:    

queryA       732:LSEVSSLKHLDLSSNLLKTINKSALETKTTTKLSMLELHGNPFECTCDIGDFRRWMDEHLNVKIPRLVDVICASPGDQRGKSIVS: 816
                :*************************     *******************************************     *******:
5awa_A_1     710:LSEVSSLKHLDLSSNLLKTINKSALXXXXXTKLSMLELHGNPFECTCDIGDFRRWMDEHLNVKIPRLVDVICAXXXXXRGKSIVS: 794
SecStr          :TTS TT  EEE  SS  S   GGG -----   SEEE TT  B  SGGGHHHHHHHHH TTSB   GGGSBB -----  SBTT :    
ExpBur          :bbebeebeebbbbebebeebeeebe-----eebeebbbbebebeeeeebbebeebbeeeeebebbebbebebe-----eeebbee:

Input Residue Numbers for Focused Sites

ex) 2,15,123