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ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(TLR8_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [590 aa] | Toll-like receptor 4,Variable lymphocyte receptor B :TLR4_MOUSE:Q4G1L2_EPTBU | |
2 | b | B 1 (C) | polymer(polypeptide(L)) [136 aa] | Lymphocyte antigen 96 :LY96_MOUSE | 261F(M) 279D 293N(D) 295S 296S(R) 319E(T) 320F(G) 340E(V) 342L(V) 343D(E) 358N 360S(A) 361R(H) 375R(S) 376G(Y) 425L(R) 459F 460E(K) 464H(Y) 489S(A) 514A(M) (identity: 19.0 %/29.2 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:7mlm_A_1 identity=29.2% |
queryA 259:RCFNAPFPCVPCDGGASI-NID----------RFAFQNLTQLRYLNLSSTSLRKINAAWFKNMPHLKVLDLEFNYLVGEIASGAF--LTMLPRLEILDLS: 345 : * ** * * *** * * * * ** * ** * * * * * ** * * : 7mlm_A_1 54:QCMDQKLSKVPDDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP-IQSFSPGSFSGLTSLENLVAVETK: 152 SecStr :E TTS SS TTS TT EEE TTS EE TTTTTT TT EEE TT EE TTTTTT TT EEE TT - TTTTTT TT EEE TTS : ExpBur :ebeeeebeebbeebeeebeebbbbebebeebeeeebeebeebeebbbbebebeebeeebbebbeebbebbbebbe-beebeeebbeebeebebbbbbebe: Contact : b b bb b bb bb b bb queryA 346:FNYIKGSYP-------QHINISRNF----------SKLLSLRALHLRGYVFQELREDDFQPLMQLPNLS-TINLGINFIKQIDFKLFQNFSNLEIIYLSE: 427 : * * * ** * * * * * * * * * * * * ** * : 7mlm_A_1 153:LASLE-SFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGN: 251 SecStr : ST-T TT TT EEE SS GGGGT TT EEE SS EE TGGGHHHHH TT EEE TT EE TTTTTT EEEEEEEES : ExpBur :beebe-ebebbebeebeebebbebebeebbbbebbeebeebeebbbbebebeebeeebbebbeeeeeeebbbbbbebebeebeeebbeebebebbbbeeb: Contact : b bb bb b queryA 428:NRISPLVKDTRQSYANSSSFQRHIRKRRSTDFE-------FDP-----------------HSNFYHFTRPLIKPQCAAYGKALDLSLNSIFFIG--PNQF: 501 : * * * * * * * * * * * * * * * ** * *: 7mlm_A_1 252:FNSSNIMKTCLQNLAG-----LHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTN--DFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHF: 344 SecStr : SSHHHHHHHHHTTTT----- EEEEEEEE TTS S GGGGGGGGGSEEEEEEE S--S GGGGG GGGTT SEEEEES TT : ExpBur :beeeeebeebbeebbe-----bebebbbbbbeeeeeebeebebebbebbeebebeebebbbbe--ebeeebbebebbbebebbbbbbbebeebeebeeeb: Contact : bbbb b bb b queryA 502:E-----------------NLPDIACLNLSANSNAQVLSGTEFSAIPHVKYLDLTNNRLDFDNASALTELS--DLEVLDLSYNSHYFRIAGVTHHLEFIQN: 582 : ** * * * * * **** * * * * * **** * * : 7mlm_A_1 345:KWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKV---ALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSAN-------FMG: 434 SecStr : SEEEEES SS TT EEEEES SS B --- TT EEE SS BEEEE HHHH S EEE S SEEEE S ------- TT: ExpBur :ebeebbbeebebeebbebebeebeebbbbebeeebebeeb---ebeebeebbbbebebebebbbbeebbbbeebebbbbbebeebebeee-------beb: Contact : b b queryA 583:FTNLKVLNLSHNNIYTLTDKYNLESKSLVELVFSGNRLDILWNDDDNRYISIFKGLKNLTRLDLSLNRLK-HIPNEAFLNLPASLTELHINDNMLKFFNW: 681 : * * * * ** * *** ** ** * * * * * * ** * * *: 7mlm_A_1 435:LEELQHLDFQHSTLKRVTEFSAF--LSLEKLLY----LDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFAN-TTNLTFLDLSKCQLEQISW: 527 SecStr : TT EEE TTSEEESTTTTTTT--TT TT E----EE TTS EE TTTTTT TT EEE TT EEGGGEE S SS- TT EEE TTS EE T: ExpBur :beebeebbbeebebeebeeebbb--ebbeebee----bbbbebebebeeebbbebbeebeebebbebbbeeebbbebbee-beebeebbbbebebeebee: queryA 682:TLLQQFPRLELLDLRGNKLLFLTDSLSDFTSSLRTLLLSHNRISHLPSGFLSEVSSLKHLDLSSNLLKTINKSALETKTTTKLSMLELHGNPFECTCDIG: 781 : ** ** * **** * ** * * * * * ** ** ** * * : 7mlm_A_1 528:GVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLKELALDTNQLKSVPDGIFDRLTSLQK--------------------------IWLHTNPWDCSCPRI: 601 SecStr :TTTTT TT EEE SS GGGGTT TT EEE SS TTTTTT TT E--------------------------EE SS B TTTT: ExpBur :bbbeebeebebbebbebebeebeebbbbebeebeebbbbebebebbeebbbeebeebee--------------------------bebeebebeeeeeeb: queryA 782:DF-RRWMDE: 789 :* ** : 7mlm_A_1 602:DYLSRWLNK: 610 SecStr :HHHHHHHHH: ExpBur :ebbbebbee: |