Protein Model on 6wml_A_1_B_1
(TEMPLATE: 
6wml
)Protein Model on 6wml_A_1_B_1
(TEMPLATE: 6wml
)| CurrentView:HTML5 Change to:[JAVA] |
DOWNLOAD: [sequence-replaced 3D model]
[for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(TLR8_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [743 aa] | Toll-like receptor 8 :TLR8_HUMAN | |
| 2 | b | B 1 (B) | polymer(polypeptide(L)) [751 aa] | Toll-like receptor 8 :TLR8_HUMAN | 182Y 183F 184N 185K 261F 262N 263A 264P 265F 266P 346F 348Y 403I 405F 427E 429R 460E 490L 491N 492S 494F 514A 516S 518A 541R 543D 566H 567Y 569R 570I 571A 572G 573V 574T 600T 601D 622I 625N 627D 628D 629N 630R (identity: 100.0 %/94.3 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:6wml_A_1 identity=94.3% |
queryA 31:SRSYPCDEKKQNDSVIAECSNRRLQEVPQTVGKYVTELDLSDNFITHITNESFQGLQNLTKINLNHNPNVQHQNGNPGIQSNGLNITDGAFLNLKNLREL: 130
:********* ******************************************************** ******************:
6wml_A_1 9:SRSYPCDEKXXXXXVIAECSNRRLQEVPQTVGKYVTELDLSDNFITHITNESFQGLQNLTKINLNHNPNVXXXXXXXXXXXXGLNITDGAFLNLKNLREL: 108
SecStr : SSEE ----- EEE SS SS S S TT SEEE TTS EE TTTTSS TT EEE S S ------------ EE TTTTTT TT EE:
ExpBur :ebeebbeee-----eebebeebebeebbeebeeebeebebbebebeebeeebbeebeebebbebbebeee------------ebebeeebbeebeebbbb:
queryA 131:LLEDNQLPQIPSGLPESLTELSLIQNNIYNITKEGISRLINLKNLYLAWNCYFNKVCEKTNIEDGVFETLTNLELLSLSFNSLSHVPPKLPSSLRKLFLS: 230
:****************************************************************************************************:
6wml_A_1 109:LLEDNQLPQIPSGLPESLTELSLIQNNIYNITKEGISRLINLKNLYLAWNCYFNKVCEKTNIEDGVFETLTNLELLSLSFNSLSHVPPKLPSSLRKLFLS: 208
SecStr :E SS SS SS TT SEEE SS EE HHHHTT TT EEE SSS TT EE TTTTTT TT EEE SS SS SS TT SEEE T:
ExpBur :ebbebebeebbeebbeebeebbbbbbebeebebebbbebbebbebebbbbbbeeeeeeebeeeebbbeebeebebbbbbbbbbeebbeebbeebbebebb:
Contact : bbbb
queryA 231:NTQIKYISEEDFKGLINLTLLDLSGNCPRCFNAPFPCVPCDGGASINIDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNMPHLKVLDLEFNYLVGEIASG: 330
:****************************************************************************************************:
6wml_A_1 209:NTQIKYISEEDFKGLINLTLLDLSGNCPRCFNAPFPCVPCDGGASINIDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNMPHLKVLDLEFNYLVGEIASG: 308
SecStr :TS EE TTTTTT TT EEE TTSS TT SS GGG EE TTTTTT TT EEE TTS S GGGGTT TT EEE SS HHHHHH :
ExpBur :bbebeebbeeebeebeebebbbbbbbbbbbeeeebeeeeeeebeebebeeebbeebeebeebbbbbbbbeebeeebbeebeebbbbbbbebebbebbeeb:
Contact : bbbbbb
queryA 331:AFLTMLPRLEILDLSFNYIKGSYPQHINISRNFSKLLSLRALHLRGYVFQELREDDFQPLMQLPNLSTINLGINFIKQIDFKLFQNFSNLEIIYLSENRI: 430
:****************************************************************************************************:
6wml_A_1 309:AFLTMLPRLEILDLSFNYIKGSYPQHINISRNFSKLLSLRALHLRGYVFQELREDDFQPLMQLPNLSTINLGINFIKQIDFKLFQNFSNLEIIYLSENRI: 408
SecStr :GGGGG TT EEE S TT SB GGGGG TT EEE TT SEE TGGGGGGTT TT EEE SS EE GGGGGGSSS EEE SS :
ExpBur :ebbeebeebbebbbbbbbeeeeeeeebebbeebeebeebebbbbebbbbeebeeebbebbbebeebebbbbbebebeebebbbbeebeebeebbbbebeb:
Contact : b b b b b b
queryA 431:SPLVKDTRQSYANSSSFQRHIRKRRSTDFEFDPHSNFYHFTRPLIKPQCAAYGKALDLSLNSIFFIGPNQFENLPDIACLNLSANSNAQVLSGTEFSAIP: 530
:*** ************************************************************************:
6wml_A_1 409:SPLXXXXXXXXXXXXXXXXXXXXXXXXXFEFDPHSNFYHFTRPLIKPQCAAYGKALDLSLNSIFFIGPNQFENLPDIACLNLSANSNAQVLSGTEFSAIP: 508
SecStr : ------------------------- S TTS SSS S SS HHHHTTS EEE TTS S TTTTTT SEEE TTS S TTTTST:
ExpBur :eee-------------------------eebebeeebbeeeeeebeeebeeeeebbbbbebebeebbeebbbebbebbbbbbbebebebebeeebbeebe:
Contact : b bbb b b b b
queryA 531:HVKYLDLTNNRLDFDNASALTELSDLEVLDLSYNSHYFRIAGVTHHLEFIQNFTNLKVLNLSHNNIYTLTDKYNLESKSLVELVFSGNRLDILWNDDDNR: 630
:****************************************************************************************************:
6wml_A_1 509:HVKYLDLTNNRLDFDNASALTELSDLEVLDLSYNSHYFRIAGVTHHLEFIQNFTNLKVLNLSHNNIYTLTDKYNLESKSLVELVFSGNRLDILWNDDDNR: 608
SecStr :T EEE SS TTTTTT TT EEE S HHHHT TTS GGGGG SS EEE TTS SS S EESS EEE SS HHHHT TT T:
ExpBur :ebebbbbbebebebeeeebbebbeebbbbbbbebeeebeeeeeebbbbbbeebeebeebebbebebebbbeeeebebebbeebbbbbbbbeebbeeebee:
Contact : b b bb bbbbbb bb b b bbbb
queryA 631:YISIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTELHINDNMLKFFNWTLLQQFPRLELLDLRGNKLLFLTDSLSDFTSSLRTLLLSHNRISHLPSG: 730
:***************************************************************************** **********************:
6wml_A_1 609:YISIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTELHINDNMLKFFNWTLLQQFPRLELLDLRGNKLLFLTDSLXDFTSSLRTLLLSHNRISHLPSG: 708
SecStr :TTTTTTEETT EEE SS S HHHHHTS TT SEEE SS S GGGGGG TT EEE SS S - S EEE SS TT:
ExpBur :bbebbeebeebeebbbbebebeebbeebbebbbeebeebbbbebebeebbbebbeebeebebbbbeebebeebbeeb-ebbebbeebbbbebebeebbee:
queryA 731:FLSEVSSLKHLDLSSNLLKTINKSALETKTTTKLSMLELHGNPFECTCDIGDFRRWMDEHLNVKIPRLVDVICASPGDQRGKSIVSLE: 818
:** ************************************************************************************:
6wml_A_1 709:FLXXVSSLKHLDLSSNLLKTINKSALETKTTTKLSMLELHGNPFECTCDIGDFRRWMDEHLNVKIPRLVDVICASPGDQRGKSIVSLE: 796
SecStr : -- S EEE SS HHHH SS EEE TT EE SSTTHHHHHHHHH TTSB TTTSBEEESTTTTTSBTTS :
ExpBur :bb--eeebbebbbbebebeebeeebbeeeeeeebeebbbbebebbbeeebeebbebbeeeeebebeebbbbebeeeeeeeebbbeebe:
|
[assembly_id:1]
[help]