Protein Model on 5ijb_A_1_B_1
(TEMPLATE: 
5ijb
)Protein Model on 5ijb_A_1_B_1
(TEMPLATE: 5ijb
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ALL MOLECULES IN THE BIOLOGICAL UNIT: |
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(TLR8_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [593 aa] | Toll-like receptor 4, Variable lymphocyte receptor B chimera :TLR4_MOUSE:Q4G1L2_EPTBU | |
| 2 | b | B 1 (C) | polymer(polypeptide(L)) [136 aa] | Lymphocyte antigen 96 :LY96_MOUSE | 261F(M) 262N(D) 279D 291Y(W) 293N(D) 295S 296S(R) 319E(T) 342L(V) 343D(E) 358N 361R(H) 373H(D) 375R(S) 400N(D) 402G(S) 425L(R) 465S(R) 468Y 489S(A) 490L(G) 514A(M) (identity: 18.2 %/29.1 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:5ijb_A_1 identity=29.1% |
queryA 259:RCFNAPFPCVPCDGGASI-NID----------RFAFQNLTQLRYLNLSSTSLRKINAAWFKNMPHLKVLDLEFNYLVGEIASGAF--LTMLPRLEILDLS: 345
: * ** * * *** * * * * ** * ** * * * * * ** * * :
5ijb_A_1 13:QCMDQKLSKVPDDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP-IQSFSPGSFSGLTSLENLVAVETK: 111
SecStr :E TT SS SSS SS SEEE TTS SB TTTTSS SEEE TT B TTTTTT TT EEE TT - TTSSTT SS EEE TTS :
ExpBur :ebeeeebeeebeebeeebebbbbbebebeebeeeebeebeebeebbbbebebeebeeebbebbeebbebbbebbe-beebeebbbeebeebeebbbbebe:
Contact : bb b b b b bb b bb
queryA 346:FNYIKGSYP-------QHINISRNF----------SKLLSLRALHLRGYVFQELREDDFQPLMQLPNLS-TINLGINFIKQIDFKLFQNFSNLEIIYLSE: 427
: * * * ** * * * * * * * * * * * * ** * :
5ijb_A_1 112:LASLE-SFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGN: 210
SecStr : ST-T TT TT EEE SS GGGGG TT EEE SS EE TTTTHHHHH SS EEE TT EE TTTTTTEEEEEEEEES :
ExpBur :beebe-ebbbeebeebeebebbebebeebbbbebbeebeebeebbbbebebeebeeebbebbeeeeeeebbbbbbebebeebeeebbeebebebbbbebb:
Contact : b b b b b b b
queryA 428:NRISPLVKDTRQSYA----------------NSSSFQRHIRKRRSTDFEFDPHSNFY--HFTRPLIKPQCAAYGKALDLSLNSIFFIG--PNQFE-----: 502
: * * * * * * * * * * * * * * * * ** * * :
5ijb_A_1 211:FNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGL-CDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLS: 309
SecStr : SSHHHHHHHHHHT SEEEEEEEEE TTS S GGGGTTT-TTSEEEEEEE SS GGGTT GGGGG S EEES TT SEEE:
ExpBur :beebeebeebbebbeebebeebbbbbeeeeeebeebebebbebb-eebebeebebbebeebeeebbebebbbebebbbbeebbbeebeebeeebebeebb:
Contact : bbb b b bb
queryA 503:------------NLPDIACLNLSANSNAQVLSGTEFSAIPHVKYLDLTNNRLDFDNASALTELS--DLEVLDLSYNSHYFRIAGVTHHLEFIQNFTNLKV: 588
: ** * * * * * **** * * * * * **** * * * :
5ijb_A_1 310:IIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKV---ALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSAN-------FMGLEELQH: 399
SecStr :EES SS TT EEEEES SS B --- TT EEE TTS BEEEE GGGT S EEE S SEEEE S ------- TT TT E:
ExpBur :beebebeebbebebeebeebbbbebeeebebeeb---ebeebbebbbbebebebeebbbeebbbbeebeebbbbebeebebeee-------beebeebee:
Contact : b b
queryA 589:LNLSHNNIYTLTDKYNLESKSLVELVFSGNRLDILWNDDDNRYISIFKGLKNLTRLDLSLNRLK-HIPNEAFLNLPASLTELHINDNMLKFFNWTLLQQF: 687
:* * * ** * *** ** ** * * * * * * ** * * * :
5ijb_A_1 400:LDFQHSTLKRVTEFSAF--LSLEKLLY----LDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFAN-TTNLTFLDLSKCQLEQISWGVFDTL: 492
SecStr :EE TT EEESTTTS TT--TT TT E----EE TTS EE GGGGTT TT EEE TT EEGGGEE STTTT- TT EEE SS EE TTTTTT :
ExpBur :bbbeebebeebeeebbb--ebbeebee----bbbbebebebeeebbbebbeebebbebbebbbeeebbbebbee-beebbebbbbebebeebeebbbeeb:
queryA 688:PRLELLDLRGNKLLFLTDSLSDFTSSLRTLLLSHNRISHLPSGFLSEVSSLKHLDLSSNLLKTINKSALETKTTTKLSMLELHGNPFECTCDIGDF-RRW: 786
: ** ** * **** * ** * * * * * ** ** ** * * * **:
5ijb_A_1 493:HRLQLLNMSHNNLLFLDSSHYNQLYSLKELALDTNQLKSVPDGIFDRLTSLQK--------------------------IWLHTNPWDCSCPRIDYLSRW: 566
SecStr :TT EEE SS GGGTTT TT EEE SS TTTTTT TT E--------------------------EE SS B TTTTHHHHHH:
ExpBur :eebebbebbebebeebeebbbeebeebeebbbbebebeebeeebbeebeebee--------------------------bebeebebebeeeebebbbeb:
queryA 787:MDE: 789
: :
5ijb_A_1 567:LNK: 569
SecStr :HHH:
ExpBur :bee:
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[assembly_id:1]
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